| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026755
Identifier: 54026755
GI number: 54026755
Start: 4990896
End: 4992314
Strand: Reverse
Name: 54026755
Synonym: nfa47810
Alternate gene names: NA
Gene position: 4992314-4990896 (Counterclockwise)
Preceding gene: 54026756
Following gene: 54026752
Centisome position: 82.91
GC content: 66.38
Gene sequence:
>1419_bases GTGGTGGATTTCGTCGGCCGTCGGCAGGAACTGGCGATTCTGGAGCGCGAGCTGCAGAAAATCGTGGACGGGGTCGAGGG AGAGCGGCCCGGACGGTGCGTGATGCTGCGTGGGCGTCGCCGCGTAGGTAAGTCGCGACTCGTGGAGCAGTTCGTGGAAG GATCGGGAGCGCCCTTTCTGTTCTACGCGGCCACTGGCGCATCCCCTCGGGATGACCTGGCCCGGTTGGCGCGGGACGCC GAGACTTCGACGCTGCCGTCGGCGCAGCTGGTGGCAGCCGCACGCCCCGAGAGCTGGGATGCTGCCTTCGACGTGTTGGC CGCGGCGTTGCCGGAGGACCGGGCGAGCGTGCTGGTCATCGACGAAGTTCCGTATCTCATGGATGCCGCTGGCGCCTTCG AGGGAATGTTGCAGCGAAGCTGGGATCGAGCCCTCGAGCGCAAGCCTGTCCTACTGATACTCATCGGATCGGACCTGTCG ATGATGGAGGCGCTCAACAGCTACGGGCGCCCGTTCCATCAACGGGGTAGGGAGATGGTCCTGGGACCGCTGAATCCCGC CGAGGTCGGGCGCATGCTCGGACTGGATCCGGCGGAGGCGTTCGATGCCGCACTGGTCACCGGAGGGCTGCCGTTGATCT GCGCGGAGTGGCCTCGAGGAGAGGGTCTTTGGAGCTTTCTCGCGGAGGCGCTCAACGACCCGGTCTCGGCCCTGTTGGTG TCGGCCGAACGCTCGCTGGCCGCCGAGTTCCCCCCGCAGGCTCAAGCCCGTACGGTGCTGTCGGCCATCGGCAGCGGCGA GCGAACCTTCACCAACATCGCCCACGCTGCTGGTGGAATCGGAGCCGCACCATTACAGCGAGCATTGGAACTGCTGATCG ACAAACGGATCGTCGCCGCGGAGCTGCCCGTTTCACTACGCCCGTCGAAGGATCGCCGTTACCGGGTGACCGACCCCTAC TTGCGGTTCTGGCTCCATCTGCTCGGCCCTTCGATGGAGGAGATCGAGCGCGGGCGAGGCGATCTGACTTTGGCGCGGAT CCGGGAGAAATGGACCAGCTGGCGTGGCCGTGCGATCGAGCCGCTCATCCGTGAAGCGATCGCCCGGATTCTGCCCGACG ACCGGCTTCCGGCCGCGCGAGCGGTCGGCGGGTATTGGACACGCAGCAACGACGTCGAGATCGACATCGTTGGCGCCGAC CGTGCACCTGTCGCGAAGGAACTGCTGTTCGTCGGCTCCATCAAGTGGTTGGAGAATTCACCCTTCGACCGGCACGACCA CGCCGCTCTGAACCGCCACCGCGCTGCTCTCACCGATGAACCCGTCCGCATGGTGGCCGTATCGCGCAGCGGTGTGGACT GTCCGGGGCTCGACGCGGTCTATGGGCCGGGCGATTTGCTGGGCGCCTGGCCGCTGTAG
Upstream 100 bases:
>100_bases CTGTATGACCCCGCCCAGGCTTCCGCGGGAAGTACTAACATAGAAGTTACTAACATTGATGTTAGTAACTTGATTGTTAG TGTGAGGTGGTGGGCTGGTC
Downstream 100 bases:
>100_bases ACGCGAGTCCAGGGCTGGGATCGTGCTGAGTCCGAAGGGCCCTGTCGACAGGTCTCACGCGCGCGGAACTTTCGCGGGCG CTGCCGCTGCGGCAACACGA
Product: hypothetical protein
Products: NA
Alternate protein names: DEXX-Box ATPase; Dexx-Box ATPase; Archaeal ATPase Fused C-Terminal Domain; Archaeal ATPase Family Protein; Prokaryotic ATPase AAA Superfamily; Aaa+ Superfamily ATPase; Archaeal ATPase Family
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MVDFVGRRQELAILERELQKIVDGVEGERPGRCVMLRGRRRVGKSRLVEQFVEGSGAPFLFYAATGASPRDDLARLARDA ETSTLPSAQLVAAARPESWDAAFDVLAAALPEDRASVLVIDEVPYLMDAAGAFEGMLQRSWDRALERKPVLLILIGSDLS MMEALNSYGRPFHQRGREMVLGPLNPAEVGRMLGLDPAEAFDAALVTGGLPLICAEWPRGEGLWSFLAEALNDPVSALLV SAERSLAAEFPPQAQARTVLSAIGSGERTFTNIAHAAGGIGAAPLQRALELLIDKRIVAAELPVSLRPSKDRRYRVTDPY LRFWLHLLGPSMEEIERGRGDLTLARIREKWTSWRGRAIEPLIREAIARILPDDRLPAARAVGGYWTRSNDVEIDIVGAD RAPVAKELLFVGSIKWLENSPFDRHDHAALNRHRAALTDEPVRMVAVSRSGVDCPGLDAVYGPGDLLGAWPL
Sequences:
>Translated_472_residues MVDFVGRRQELAILERELQKIVDGVEGERPGRCVMLRGRRRVGKSRLVEQFVEGSGAPFLFYAATGASPRDDLARLARDA ETSTLPSAQLVAAARPESWDAAFDVLAAALPEDRASVLVIDEVPYLMDAAGAFEGMLQRSWDRALERKPVLLILIGSDLS MMEALNSYGRPFHQRGREMVLGPLNPAEVGRMLGLDPAEAFDAALVTGGLPLICAEWPRGEGLWSFLAEALNDPVSALLV SAERSLAAEFPPQAQARTVLSAIGSGERTFTNIAHAAGGIGAAPLQRALELLIDKRIVAAELPVSLRPSKDRRYRVTDPY LRFWLHLLGPSMEEIERGRGDLTLARIREKWTSWRGRAIEPLIREAIARILPDDRLPAARAVGGYWTRSNDVEIDIVGAD RAPVAKELLFVGSIKWLENSPFDRHDHAALNRHRAALTDEPVRMVAVSRSGVDCPGLDAVYGPGDLLGAWPL >Mature_472_residues MVDFVGRRQELAILERELQKIVDGVEGERPGRCVMLRGRRRVGKSRLVEQFVEGSGAPFLFYAATGASPRDDLARLARDA ETSTLPSAQLVAAARPESWDAAFDVLAAALPEDRASVLVIDEVPYLMDAAGAFEGMLQRSWDRALERKPVLLILIGSDLS MMEALNSYGRPFHQRGREMVLGPLNPAEVGRMLGLDPAEAFDAALVTGGLPLICAEWPRGEGLWSFLAEALNDPVSALLV SAERSLAAEFPPQAQARTVLSAIGSGERTFTNIAHAAGGIGAAPLQRALELLIDKRIVAAELPVSLRPSKDRRYRVTDPY LRFWLHLLGPSMEEIERGRGDLTLARIREKWTSWRGRAIEPLIREAIARILPDDRLPAARAVGGYWTRSNDVEIDIVGAD RAPVAKELLFVGSIKWLENSPFDRHDHAALNRHRAALTDEPVRMVAVSRSGVDCPGLDAVYGPGDLLGAWPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51688; Mature: 51688
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDFVGRRQELAILERELQKIVDGVEGERPGRCVMLRGRRRVGKSRLVEQFVEGSGAPFL CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHCCHHHHHHHHHCCCCCCEE FYAATGASPRDDLARLARDAETSTLPSAQLVAAARPESWDAAFDVLAAALPEDRASVLVI EEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEE DEVPYLMDAAGAFEGMLQRSWDRALERKPVLLILIGSDLSMMEALNSYGRPFHQRGREMV ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHCCCEEE LGPLNPAEVGRMLGLDPAEAFDAALVTGGLPLICAEWPRGEGLWSFLAEALNDPVSALLV ECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHH SAERSLAAEFPPQAQARTVLSAIGSGERTFTNIAHAAGGIGAAPLQRALELLIDKRIVAA HHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHE ELPVSLRPSKDRRYRVTDPYLRFWLHLLGPSMEEIERGRGDLTLARIREKWTSWRGRAIE CCCCCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHH PLIREAIARILPDDRLPAARAVGGYWTRSNDVEIDIVGADRAPVAKELLFVGSIKWLENS HHHHHHHHHHCCCCCCCHHHHCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC PFDRHDHAALNRHRAALTDEPVRMVAVSRSGVDCPGLDAVYGPGDLLGAWPL CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVDFVGRRQELAILERELQKIVDGVEGERPGRCVMLRGRRRVGKSRLVEQFVEGSGAPFL CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHCCHHHHHHHHHCCCCCCEE FYAATGASPRDDLARLARDAETSTLPSAQLVAAARPESWDAAFDVLAAALPEDRASVLVI EEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEE DEVPYLMDAAGAFEGMLQRSWDRALERKPVLLILIGSDLSMMEALNSYGRPFHQRGREMV ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHCCCEEE LGPLNPAEVGRMLGLDPAEAFDAALVTGGLPLICAEWPRGEGLWSFLAEALNDPVSALLV ECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHH SAERSLAAEFPPQAQARTVLSAIGSGERTFTNIAHAAGGIGAAPLQRALELLIDKRIVAA HHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHE ELPVSLRPSKDRRYRVTDPYLRFWLHLLGPSMEEIERGRGDLTLARIREKWTSWRGRAIE CCCCCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHH PLIREAIARILPDDRLPAARAVGGYWTRSNDVEIDIVGADRAPVAKELLFVGSIKWLENS HHHHHHHHHHCCCCCCCHHHHCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC PFDRHDHAALNRHRAALTDEPVRMVAVSRSGVDCPGLDAVYGPGDLLGAWPL CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA