| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026746
Identifier: 54026746
GI number: 54026746
Start: 4982289
End: 4983371
Strand: Reverse
Name: 54026746
Synonym: nfa47720
Alternate gene names: NA
Gene position: 4983371-4982289 (Counterclockwise)
Preceding gene: 54026747
Following gene: 54026745
Centisome position: 82.76
GC content: 76.08
Gene sequence:
>1083_bases ATGAGCGCTGACCTCGCCGTCGCGCTGCGCCGACTGGAACAGGAGGGACGCACCGGCGTGCTGCGGGCGGGGGACGGCGA ATTCCACCTCGCCGACGGGGTCATCGCCTCGGCCCACTGCCGTCGCGCCACCGGGCTGGACCGGCTGGTGGTGGCGGCGG GCGTCGCCACCCCGGAGGACTGGCAGCGGGCGGGGGCGGGCGATCCGAGCCGGGTGCTGGCGCAACCGCAACTGGAAACG CTTGCGCTGCTGTCGGTTTACGACGCCGCCTATTTCCTGCTCGCCTCGACCGCGGAACCGGAGTTCCGGCCCGCGCCCCC GCACTGGCTGGCCGGGGTCTGTCATGTGCGGCCGCGCGAACTGGTGCGCGAGTGTGCGCGGCGCGGTGATCCGGAGTCGG GGCCGTGGCCCGCCGAACTGGTCGACCGGGTGCCGGTGGTCCCGGTGCGCCGGGTGCACCGCCGCCGGGTGGTGCTCACC GCGGGACAGGTGGAGGTGCTCGCGGCCGCCGACGCCCGCCGCAGCATCACCGACATCGCGCGGGATCTCGGGCGCACGAC CTACGGGTGTCTCGCGGCGGTGCGCGAGCTGACCGCCGCGGGGCTGATCGAATCTCCTGCGGCGCAATGGAAGAGGGTGA GCCCGGAGGTCACGCCGGAGCGCCGGGCGGCCGGGTACGCCATCGGTGCGGAACCGCCGGCGGGCCGGGGCGCCGAGCGG TCCACGGGACGGCATTCGATCGATCGCGTCCGAACGAACCCTGGCCCGCCTCGCGCGACGGCGCTGTCCCCGGTCGCCGC CCAGCAGGCCGCCGCGGAGACGGCCCGGAACGCCGTCGCGGCGGCGATGGAGGCCGCCCGGCACGCGCCACCCCGGATGC GGCCGCCCGGCGGCGACACGCGCCGAGCCCGGACCGGGCCGGACACCGCCCGCGACACCCCGCGCGACCCGAAATCCGCA CCGCCGCCACCACTTCGACGCCGGGTGCGGCAGCCGGTACCCACTCCCGGTCCGGACCGATGGGAGCCGGTGGATGTGAA CGTGCTCGTCCGCGTGCGGGCGGCATTGGAGGAGCTTGCGTGA
Upstream 100 bases:
>100_bases CGAATCTTCGTGCACGTGGTGTGTGACGAGGCTACCGGGAATCTCGGGCTCGCGCGCTATCAGCTGACGACGATCCTCAC CGAATTCGTCGAGGGCGACG
Downstream 100 bases:
>100_bases CCGCGCGGAAGAAACTGCTCGGCGATTGGATGGGAAGGTTGACCAAGGTGGCGATGTCCGGACCCGAACCGTACGCGGTG GTGCTGGCGGAGCTGAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MSADLAVALRRLEQEGRTGVLRAGDGEFHLADGVIASAHCRRATGLDRLVVAAGVATPEDWQRAGAGDPSRVLAQPQLET LALLSVYDAAYFLLASTAEPEFRPAPPHWLAGVCHVRPRELVRECARRGDPESGPWPAELVDRVPVVPVRRVHRRRVVLT AGQVEVLAAADARRSITDIARDLGRTTYGCLAAVRELTAAGLIESPAAQWKRVSPEVTPERRAAGYAIGAEPPAGRGAER STGRHSIDRVRTNPGPPRATALSPVAAQQAAAETARNAVAAAMEAARHAPPRMRPPGGDTRRARTGPDTARDTPRDPKSA PPPPLRRRVRQPVPTPGPDRWEPVDVNVLVRVRAALEELA
Sequences:
>Translated_360_residues MSADLAVALRRLEQEGRTGVLRAGDGEFHLADGVIASAHCRRATGLDRLVVAAGVATPEDWQRAGAGDPSRVLAQPQLET LALLSVYDAAYFLLASTAEPEFRPAPPHWLAGVCHVRPRELVRECARRGDPESGPWPAELVDRVPVVPVRRVHRRRVVLT AGQVEVLAAADARRSITDIARDLGRTTYGCLAAVRELTAAGLIESPAAQWKRVSPEVTPERRAAGYAIGAEPPAGRGAER STGRHSIDRVRTNPGPPRATALSPVAAQQAAAETARNAVAAAMEAARHAPPRMRPPGGDTRRARTGPDTARDTPRDPKSA PPPPLRRRVRQPVPTPGPDRWEPVDVNVLVRVRAALEELA >Mature_359_residues SADLAVALRRLEQEGRTGVLRAGDGEFHLADGVIASAHCRRATGLDRLVVAAGVATPEDWQRAGAGDPSRVLAQPQLETL ALLSVYDAAYFLLASTAEPEFRPAPPHWLAGVCHVRPRELVRECARRGDPESGPWPAELVDRVPVVPVRRVHRRRVVLTA GQVEVLAAADARRSITDIARDLGRTTYGCLAAVRELTAAGLIESPAAQWKRVSPEVTPERRAAGYAIGAEPPAGRGAERS TGRHSIDRVRTNPGPPRATALSPVAAQQAAAETARNAVAAAMEAARHAPPRMRPPGGDTRRARTGPDTARDTPRDPKSAP PPPLRRRVRQPVPTPGPDRWEPVDVNVLVRVRAALEELA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38636; Mature: 38505
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADLAVALRRLEQEGRTGVLRAGDGEFHLADGVIASAHCRRATGLDRLVVAAGVATPED CCCHHHHHHHHHHHCCCCCEEECCCCCEEECCCCHHHHHHHHHCCHHHHHHHHCCCCCHH WQRAGAGDPSRVLAQPQLETLALLSVYDAAYFLLASTAEPEFRPAPPHWLAGVCHVRPRE HHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHH LVRECARRGDPESGPWPAELVDRVPVVPVRRVHRRRVVLTAGQVEVLAAADARRSITDIA HHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHCEEEEECCCEEEEEHHHHHHHHHHHH RDLGRTTYGCLAAVRELTAAGLIESPAAQWKRVSPEVTPERRAAGYAIGAEPPAGRGAER HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHCCEECCCCCCCCCCCCC STGRHSIDRVRTNPGPPRATALSPVAAQQAAAETARNAVAAAMEAARHAPPRMRPPGGDT CCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC RRARTGPDTARDTPRDPKSAPPPPLRRRVRQPVPTPGPDRWEPVDVNVLVRVRAALEELA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SADLAVALRRLEQEGRTGVLRAGDGEFHLADGVIASAHCRRATGLDRLVVAAGVATPED CCHHHHHHHHHHHCCCCCEEECCCCCEEECCCCHHHHHHHHHCCHHHHHHHHCCCCCHH WQRAGAGDPSRVLAQPQLETLALLSVYDAAYFLLASTAEPEFRPAPPHWLAGVCHVRPRE HHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHH LVRECARRGDPESGPWPAELVDRVPVVPVRRVHRRRVVLTAGQVEVLAAADARRSITDIA HHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHCEEEEECCCEEEEEHHHHHHHHHHHH RDLGRTTYGCLAAVRELTAAGLIESPAAQWKRVSPEVTPERRAAGYAIGAEPPAGRGAER HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHCCEECCCCCCCCCCCCC STGRHSIDRVRTNPGPPRATALSPVAAQQAAAETARNAVAAAMEAARHAPPRMRPPGGDT CCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC RRARTGPDTARDTPRDPKSAPPPPLRRRVRQPVPTPGPDRWEPVDVNVLVRVRAALEELA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA