| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026744
Identifier: 54026744
GI number: 54026744
Start: 4981433
End: 4981804
Strand: Reverse
Name: 54026744
Synonym: nfa47700
Alternate gene names: NA
Gene position: 4981804-4981433 (Counterclockwise)
Preceding gene: 54026745
Following gene: 54026741
Centisome position: 82.74
GC content: 63.71
Gene sequence:
>372_bases ATGACCAATATGGATCTGGCCCTCAAGGACATGATGGTGATCGACGGGGCCGTGGGCGCCGCGGTGGTCGACTACAACTC CGGCATGGCGCTCGGCATGCTCGGCAGCTCCAAATCGCTGGACCTGCAGATCGCCGCGGCGGGCAACACCGAGGTGATGC GCGCGAAGATGCGCACCATGGACCAGCTCGGCCTCAGCGACGAGATCGAGGACATCCTCATCACCCTCTCCGGCCAGTAC CACATCATCCGGCCCATGACCGGGCGCAAATCCAAGGGCCTGTTCCTCTATCTCGCGCTCGATCGCGGCCGGGCCAATTT GGCGCTGGCCCGGCACCGGCTCAAGGGGATCGAAGAAGATCTCGAGATCTAG
Upstream 100 bases:
>100_bases AGTCGCGGCCGGTGGCCCGCGCCATCGCCGACCACCTGGCCGTGCTGGCGAACGGGCCGAGACACAAGCAGCCGACGAAA ACCGATTGAAAGGAACGGAA
Downstream 100 bases:
>100_bases CGCTCCCGGTAGCGCTCACGCCGACAGGCGGTAGAAACGCCAGAAGCCGAAATCCTCGATCGGCAGGATCTCCACCTCCG CGAAACCGGCCTCGCGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MTNMDLALKDMMVIDGAVGAAVVDYNSGMALGMLGSSKSLDLQIAAAGNTEVMRAKMRTMDQLGLSDEIEDILITLSGQY HIIRPMTGRKSKGLFLYLALDRGRANLALARHRLKGIEEDLEI
Sequences:
>Translated_123_residues MTNMDLALKDMMVIDGAVGAAVVDYNSGMALGMLGSSKSLDLQIAAAGNTEVMRAKMRTMDQLGLSDEIEDILITLSGQY HIIRPMTGRKSKGLFLYLALDRGRANLALARHRLKGIEEDLEI >Mature_122_residues TNMDLALKDMMVIDGAVGAAVVDYNSGMALGMLGSSKSLDLQIAAAGNTEVMRAKMRTMDQLGLSDEIEDILITLSGQYH IIRPMTGRKSKGLFLYLALDRGRANLALARHRLKGIEEDLEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13398; Mature: 13267
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 8.1 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 7.4 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNMDLALKDMMVIDGAVGAAVVDYNSGMALGMLGSSKSLDLQIAAAGNTEVMRAKMRTM CCCCCHHHHHHEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHH DQLGLSDEIEDILITLSGQYHIIRPMTGRKSKGLFLYLALDRGRANLALARHRLKGIEED HHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH LEI CCC >Mature Secondary Structure TNMDLALKDMMVIDGAVGAAVVDYNSGMALGMLGSSKSLDLQIAAAGNTEVMRAKMRTM CCCCHHHHHHEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHH DQLGLSDEIEDILITLSGQYHIIRPMTGRKSKGLFLYLALDRGRANLALARHRLKGIEED HHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH LEI CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA