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The map label for this gene is dapL [H]

Identifier: 54026724

GI number: 54026724

Start: 4961383

End: 4962504

Strand: Reverse

Name: dapL [H]

Synonym: nfa47500

Alternate gene names: 54026724

Gene position: 4962504-4961383 (Counterclockwise)

Preceding gene: 54026725

Following gene: 54026722

Centisome position: 82.42

GC content: 72.91

Gene sequence:

>1122_bases
GTGAGACCACCGGTGGTATCGCGTGGCCGGGTCAGCAGTCTGCTACCCGATTTTCCGTGGGACACCATCGCCGCGGTGAA
GGCGAAGGCGGCGGCCCACCCCGGCGGGATCGTCGATCTGTCGGTGGGCACGCCGGTCGACCCGGTCGCCCCGGTGATCC
GCACGGCGCTCGACTCCGTCGCGGAGGTGCCGGGGTACCCGACCACCCACGGCACCCCCGAACTGCGCGCCGCCGCGGTG
GACGCGCTCAAACGGCGCTACGGCGTGACCGGCGTGGACCCGGCGGCGGTGCTGCCCGTCATCGGCACCAAGGAGCTGAT
CGCCGGGCTGCCGCGGCTGCTCGGCGTCGGCCCGGCCGACCTGGTCGTCATCCCGGAGATCGCCTACCCGACCTACGAGG
TGGGCGCGCTGCTGGCGGGCGCGCAGATCCTGCGCGCGGACGGACTGACCCGACTCGGGCCGCAGTCGCCCGCACTGATC
TACCTCAACTCCCCGTCCAACCCGACCGGGCGTGTGCTGGGCGTCGAGCATCTGCGCAAGGTGGTGGCCTTCGCCCGCGA
GCGCGGCGCCGTCGTCGCCTCCGACGAGTGCTACCTCGGCCTGTCCTGGGACGCGCGCGCCCTGTCGATCCTGGATCCGC
AGGTGTGCGACGGCGATCACACCGGCCTGCTCGCGATCCATTCGCTGTCGAAGACCTCCAACCTGGCCAGCTACCGTGCC
GGGTTCGTCGCCGGTGATCCGGAACTGGTGGCCGAGCTGCTCGAGGTGCGCAAGCACTCCGGCATGATGGTGCCCTTCCC
GATCCAGGCCGCGATGACCGCCGCGCTGGCCGACGACACCCACGAGGCCCAGCAGCGCGAGCGTTACCGGGTGCGCCGCG
AGCAGCTGCGGGCCGCGCTGACCGCCGCCGGTTTCCGCATCGACCACTCCGAGGCGGGCCTGTACCTGTGGTCCACCCGC
GGCGAGAACGCCCGCACCACGCTGGACTGGCTCGCCGAGCGCGGCATCCTCGCCGCCCCCGGCGACTTCTACGGCCCGGC
CTCCGGCGAGCACGTGCGCATCGCCCTCACCGCCACCGACGAACGGATCGCCGCCGCGGTCGCCCGCCTGACCACGAACT
GA

Upstream 100 bases:

>100_bases
TGGACTTCTTCGACGAGCTGGGTTCCCCGGGCGGCGCGACGAAGGTCGGCAAGGTCGACTACGATCCGCCGTTCATCAAG
GAACTTCCCCCGATGGGGGA

Downstream 100 bases:

>100_bases
CGGCGCGAGTGTCCGTGCCACGCGCCGCGTCGTGGTTGTCAGGTCCATGCCGGTGAGGGTGACAGCGCTCCGGTCGTCTC
AGGGTGCGTCCAGCACGCTC

Product: N-succinyldiaminopimelate aminotransferase

Products: NA

Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRPPVVSRGRVSSLLPDFPWDTIAAVKAKAAAHPGGIVDLSVGTPVDPVAPVIRTALDSVAEVPGYPTTHGTPELRAAAV
DALKRRYGVTGVDPAAVLPVIGTKELIAGLPRLLGVGPADLVVIPEIAYPTYEVGALLAGAQILRADGLTRLGPQSPALI
YLNSPSNPTGRVLGVEHLRKVVAFARERGAVVASDECYLGLSWDARALSILDPQVCDGDHTGLLAIHSLSKTSNLASYRA
GFVAGDPELVAELLEVRKHSGMMVPFPIQAAMTAALADDTHEAQQRERYRVRREQLRAALTAAGFRIDHSEAGLYLWSTR
GENARTTLDWLAERGILAAPGDFYGPASGEHVRIALTATDERIAAAVARLTTN

Sequences:

>Translated_373_residues
MRPPVVSRGRVSSLLPDFPWDTIAAVKAKAAAHPGGIVDLSVGTPVDPVAPVIRTALDSVAEVPGYPTTHGTPELRAAAV
DALKRRYGVTGVDPAAVLPVIGTKELIAGLPRLLGVGPADLVVIPEIAYPTYEVGALLAGAQILRADGLTRLGPQSPALI
YLNSPSNPTGRVLGVEHLRKVVAFARERGAVVASDECYLGLSWDARALSILDPQVCDGDHTGLLAIHSLSKTSNLASYRA
GFVAGDPELVAELLEVRKHSGMMVPFPIQAAMTAALADDTHEAQQRERYRVRREQLRAALTAAGFRIDHSEAGLYLWSTR
GENARTTLDWLAERGILAAPGDFYGPASGEHVRIALTATDERIAAAVARLTTN
>Mature_373_residues
MRPPVVSRGRVSSLLPDFPWDTIAAVKAKAAAHPGGIVDLSVGTPVDPVAPVIRTALDSVAEVPGYPTTHGTPELRAAAV
DALKRRYGVTGVDPAAVLPVIGTKELIAGLPRLLGVGPADLVVIPEIAYPTYEVGALLAGAQILRADGLTRLGPQSPALI
YLNSPSNPTGRVLGVEHLRKVVAFARERGAVVASDECYLGLSWDARALSILDPQVCDGDHTGLLAIHSLSKTSNLASYRA
GFVAGDPELVAELLEVRKHSGMMVPFPIQAAMTAALADDTHEAQQRERYRVRREQLRAALTAAGFRIDHSEAGLYLWSTR
GENARTTLDWLAERGILAAPGDFYGPASGEHVRIALTATDERIAAAVARLTTN

Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=377, Percent_Identity=31.0344827586207, Blast_Score=144, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR019881
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.83 [H]

Molecular weight: Translated: 39506; Mature: 39506

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPPVVSRGRVSSLLPDFPWDTIAAVKAKAAAHPGGIVDLSVGTPVDPVAPVIRTALDSV
CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
AEVPGYPTTHGTPELRAAAVDALKRRYGVTGVDPAAVLPVIGTKELIAGLPRLLGVGPAD
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCC
LVVIPEIAYPTYEVGALLAGAQILRADGLTRLGPQSPALIYLNSPSNPTGRVLGVEHLRK
EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHH
VVAFARERGAVVASDECYLGLSWDARALSILDPQVCDGDHTGLLAIHSLSKTSNLASYRA
HHHHHHHCCCEEECCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHC
GFVAGDPELVAELLEVRKHSGMMVPFPIQAAMTAALADDTHEAQQRERYRVRREQLRAAL
CCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TAAGFRIDHSEAGLYLWSTRGENARTTLDWLAERGILAAPGDFYGPASGEHVRIALTATD
HHHCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECH
ERIAAAVARLTTN
HHHHHHHHHHHCC
>Mature Secondary Structure
MRPPVVSRGRVSSLLPDFPWDTIAAVKAKAAAHPGGIVDLSVGTPVDPVAPVIRTALDSV
CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
AEVPGYPTTHGTPELRAAAVDALKRRYGVTGVDPAAVLPVIGTKELIAGLPRLLGVGPAD
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCC
LVVIPEIAYPTYEVGALLAGAQILRADGLTRLGPQSPALIYLNSPSNPTGRVLGVEHLRK
EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHH
VVAFARERGAVVASDECYLGLSWDARALSILDPQVCDGDHTGLLAIHSLSKTSNLASYRA
HHHHHHHCCCEEECCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHC
GFVAGDPELVAELLEVRKHSGMMVPFPIQAAMTAALADDTHEAQQRERYRVRREQLRAAL
CCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TAAGFRIDHSEAGLYLWSTRGENARTTLDWLAERGILAAPGDFYGPASGEHVRIALTATD
HHHCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECH
ERIAAAVARLTTN
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA