| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026714
Identifier: 54026714
GI number: 54026714
Start: 4951074
End: 4951907
Strand: Reverse
Name: 54026714
Synonym: nfa47400
Alternate gene names: NA
Gene position: 4951907-4951074 (Counterclockwise)
Preceding gene: 54026715
Following gene: 54026713
Centisome position: 82.24
GC content: 68.35
Gene sequence:
>834_bases ATGTCGATCGATGTCCCCGAGAACGAGGTAGGCGCCGAACCGCGCAACCGGGCAGCCGCCAAACCGAAGCCGACCGCCAA GTTCCGTGGCCCGATCATGTTCCGCCGGGACCGCAAGCCCGGCGTGCGCACCGCCGACCGCAACCTGCTCGACACCAGGG CCGACGGCGACTGGGTGCACACCGACCCCTGGCGGGTGCTGCGCATCCAGGCCGAGTTCGTGGAGGGCTTCGGCGCGCTG GCCGAACTGCCGCACGCGGTGACCGTGTTCGGGTCGGCGCGCACCCCGGTCGACCACCCCGAGTACGAGGCCGGTTACGC CATCGGCGCGGCGCTGGCGCGGGCCGGCTTCGCGGTGATCACCGGCGGCGGCCCGGGTGCGATGGAGGCCGCCAACCGCG GCGCCAGCGAGGCGGGCGGCTACTCGATCGGCCTCGGCATCGAACTGCCCTTCGAGCAGAGCCTCAACGACTGGGTGGAC CTGGGCATCAACTTCCGCTACTTCTTCGTCCGCAAGACGATGTTCGTGAAGTACTCGGAGGCATTCGTCTGCCTGCCCGG TGGTTTCGGCACACTCGACGAACTGTTCGAGGCGCTCACCCTGGTGCAGACCGGCAAGATCACCCGGTTCCCGATCATCC TGTTCGGCAGCTCCTACTGGGCGGGCCTGGTGGACTGGATGCGCAGTTCGCTGGAAGGTTTCGGCAAGATCTCCGCGGGC GATCTCGATCTGCTGCACGTGACCGACCACGTCGACGACGTGGTCGACATCATCGCGCGCGCCGCCGAGCAGCGCGCCGA ACTGGACACCTACGGAACGGAGGATCAGTGGTGA
Upstream 100 bases:
>100_bases CGCCTACCTCACCGGCGCGGTCTGAGCGCGTCACCGAGCATCCGCTCGGCGTTCACCGCCGCGGCCGTGTGCGGTGGCAC CGGACCGGTAGCGTGAAAGC
Downstream 100 bases:
>100_bases CTCGGGCGCCGTTCGCGGTGTGCGTCTACTGCTCGGCCAGCACCACCGACCCCGAACAGCTCGACCTCGCGGCCCGGGTC GGCGCCGAGATCGCCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MSIDVPENEVGAEPRNRAAAKPKPTAKFRGPIMFRRDRKPGVRTADRNLLDTRADGDWVHTDPWRVLRIQAEFVEGFGAL AELPHAVTVFGSARTPVDHPEYEAGYAIGAALARAGFAVITGGGPGAMEAANRGASEAGGYSIGLGIELPFEQSLNDWVD LGINFRYFFVRKTMFVKYSEAFVCLPGGFGTLDELFEALTLVQTGKITRFPIILFGSSYWAGLVDWMRSSLEGFGKISAG DLDLLHVTDHVDDVVDIIARAAEQRAELDTYGTEDQW
Sequences:
>Translated_277_residues MSIDVPENEVGAEPRNRAAAKPKPTAKFRGPIMFRRDRKPGVRTADRNLLDTRADGDWVHTDPWRVLRIQAEFVEGFGAL AELPHAVTVFGSARTPVDHPEYEAGYAIGAALARAGFAVITGGGPGAMEAANRGASEAGGYSIGLGIELPFEQSLNDWVD LGINFRYFFVRKTMFVKYSEAFVCLPGGFGTLDELFEALTLVQTGKITRFPIILFGSSYWAGLVDWMRSSLEGFGKISAG DLDLLHVTDHVDDVVDIIARAAEQRAELDTYGTEDQW >Mature_276_residues SIDVPENEVGAEPRNRAAAKPKPTAKFRGPIMFRRDRKPGVRTADRNLLDTRADGDWVHTDPWRVLRIQAEFVEGFGALA ELPHAVTVFGSARTPVDHPEYEAGYAIGAALARAGFAVITGGGPGAMEAANRGASEAGGYSIGLGIELPFEQSLNDWVDL GINFRYFFVRKTMFVKYSEAFVCLPGGFGTLDELFEALTLVQTGKITRFPIILFGSSYWAGLVDWMRSSLEGFGKISAGD LDLLHVTDHVDDVVDIIARAAEQRAELDTYGTEDQW
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30331; Mature: 30199
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDVPENEVGAEPRNRAAAKPKPTAKFRGPIMFRRDRKPGVRTADRNLLDTRADGDWVH CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEE TDPWRVLRIQAEFVEGFGALAELPHAVTVFGSARTPVDHPEYEAGYAIGAALARAGFAVI CCCEEEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEE TGGGPGAMEAANRGASEAGGYSIGLGIELPFEQSLNDWVDLGINFRYFFVRKTMFVKYSE ECCCCCHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEEHEEEEEECC AFVCLPGGFGTLDELFEALTLVQTGKITRFPIILFGSSYWAGLVDWMRSSLEGFGKISAG EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC DLDLLHVTDHVDDVVDIIARAAEQRAELDTYGTEDQW CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SIDVPENEVGAEPRNRAAAKPKPTAKFRGPIMFRRDRKPGVRTADRNLLDTRADGDWVH CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCEEE TDPWRVLRIQAEFVEGFGALAELPHAVTVFGSARTPVDHPEYEAGYAIGAALARAGFAVI CCCEEEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEE TGGGPGAMEAANRGASEAGGYSIGLGIELPFEQSLNDWVDLGINFRYFFVRKTMFVKYSE ECCCCCHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEEHEEEEEECC AFVCLPGGFGTLDELFEALTLVQTGKITRFPIILFGSSYWAGLVDWMRSSLEGFGKISAG EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC DLDLLHVTDHVDDVVDIIARAAEQRAELDTYGTEDQW CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA