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The map label for this gene is ydiD [C]

Identifier: 54026661

GI number: 54026661

Start: 4891450

End: 4892712

Strand: Reverse

Name: ydiD [C]

Synonym: nfa46880

Alternate gene names: 54026661

Gene position: 4892712-4891450 (Counterclockwise)

Preceding gene: 54026662

Following gene: 54026659

Centisome position: 81.26

GC content: 73.79

Gene sequence:

>1263_bases
ATGTCGCAGCAGTTGGTCGTCGAATATCCCCTCACCCGTGCGCGCCTGTGCGACAACCCGCTGGCGCGCGGCGCCGACGG
CGTGCTCCGGTACGGCAACCTCACCCCGGCGCTCACCGAGCTGCTCGACCTGCAGGTGCATGCCTTCGCCGCCCGGGAAG
CGGTGGTGGAGCCGGGCGGGCCCCGGCTCACCTATCGCGAGATGTGGCATTCGGCCTCGCGGATCGCCGGTGGCCTGCAG
GAGCACGGCATCGGCTACGGCGACCGGGTCGCGATCCGGATGCCCGCCGGGGTGCGGTGGGTGCAGGCGTTCCTGGGCGC
GCTGCTCAGCGGCGCGGTGCCGGTGCTGGTGCCCGACGGGCTCGCGCCGGGCATCGCCGAGCGCGTGATCGCCGACAGCG
CGGTCGATTTCGTGCTCGGCACCGGGACCCGCCTGCCCGACGGCGCGGCGTTCATCGACGACGGCGCCGCACTGGGCGAT
CTCGCGGTGCTCTGCTACACCGGCGAGACCCCCGAGCCCAAGGGGGTCGAACTCACCAACGAGAACCTGCTGTCGGCGGT
GCGTTCGGTGGTCGCCGCGCTGGATCTGCCCACCGACGGTGTGCGCAATCTGGTGCTGTTGCCGCTGTCGGAGGCCGGTG
GCTGCGTCGACCAGTTGCTGCCGACGTTCGCCGTCGGCGGCACGGTGGTGCTCGCGCCGGACCGGGCCGGCCTCGCCCGG
GCGCTCGTCGCCGAGCGGGTCGACATGGTCTCGGCCACGCCGGAGATCTTCGCGGGTTTGTTGCCCACCCTCGCCGAACT
GCGCGCCGACGGGGTGCGCACGGACGGTGTCCTGCGGGTCAGCAGCGCCGGTCAGCGCGCCGAACGCCGCCGCGCGCCGC
GCCCGGAGCTGCCGGCCGCGCTGCGTGAGCTGTTCCCCGCCGCCCGGCACTGGTCGGTGTGGGGCGCCACCGAGACCAGC
GGTATCGGTCTCGCCCTCGACGTCACCGACGCCGACCGCACCGCCACCGTCGTGGACACCGCCGCCACCGACACCGCCAC
CGCGACCGTGCTCGGATTCCCGTTCGGCGGAACGGAACTGGCGCTGTGCGGGCCGCGTGCCGACACCGGCTACGGCGAAC
TGCTGTGCCGCGGCCCGAATGTCAGCCGCCGGTACTGGAACGACCCGGAATCGACCGCCGACCGGTTCACCGGCGGCTGG
TTCCACACCGGCGACCAGGTCCGCATCGCCCCCGACGGGCTGGTGTACCGGGCCACCGCGTAG

Upstream 100 bases:

>100_bases
GGGACCCGCCGGAGGGACACAGTCCGACAACAACACCGCGCGATTGTGATCCGCGTCATATAGTGCAGGGGCCTGCTGGC
TCTAGGCACGCGGAGGACGA

Downstream 100 bases:

>100_bases
GCGCTACTCGAGCATCCGTTCGCGCAGCCGTTCCCGCAGCCGCGCGTCCAGGCCCGCGGCGGCGAGGAAGCTGTCGTGGT
CGCCGTGCAGTTCGCGCACC

Product: putative acyl-CoA synthetase

Products: NA

Alternate protein names: AMP-Dependent Synthetase And Ligase; Acyl-CoA Synthetase; Long-Chain Acyl-CoA Synthetase; Fatty Acid-CoA Ligase; Acyl-CoA Ligase/Synthetase; Acyltransferase Family Protein; Feruloyl-CoA Synthetase; O-Succinylbenzoate-CoA Ligase

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSQQLVVEYPLTRARLCDNPLARGADGVLRYGNLTPALTELLDLQVHAFAAREAVVEPGGPRLTYREMWHSASRIAGGLQ
EHGIGYGDRVAIRMPAGVRWVQAFLGALLSGAVPVLVPDGLAPGIAERVIADSAVDFVLGTGTRLPDGAAFIDDGAALGD
LAVLCYTGETPEPKGVELTNENLLSAVRSVVAALDLPTDGVRNLVLLPLSEAGGCVDQLLPTFAVGGTVVLAPDRAGLAR
ALVAERVDMVSATPEIFAGLLPTLAELRADGVRTDGVLRVSSAGQRAERRRAPRPELPAALRELFPAARHWSVWGATETS
GIGLALDVTDADRTATVVDTAATDTATATVLGFPFGGTELALCGPRADTGYGELLCRGPNVSRRYWNDPESTADRFTGGW
FHTGDQVRIAPDGLVYRATA

Sequences:

>Translated_420_residues
MSQQLVVEYPLTRARLCDNPLARGADGVLRYGNLTPALTELLDLQVHAFAAREAVVEPGGPRLTYREMWHSASRIAGGLQ
EHGIGYGDRVAIRMPAGVRWVQAFLGALLSGAVPVLVPDGLAPGIAERVIADSAVDFVLGTGTRLPDGAAFIDDGAALGD
LAVLCYTGETPEPKGVELTNENLLSAVRSVVAALDLPTDGVRNLVLLPLSEAGGCVDQLLPTFAVGGTVVLAPDRAGLAR
ALVAERVDMVSATPEIFAGLLPTLAELRADGVRTDGVLRVSSAGQRAERRRAPRPELPAALRELFPAARHWSVWGATETS
GIGLALDVTDADRTATVVDTAATDTATATVLGFPFGGTELALCGPRADTGYGELLCRGPNVSRRYWNDPESTADRFTGGW
FHTGDQVRIAPDGLVYRATA
>Mature_419_residues
SQQLVVEYPLTRARLCDNPLARGADGVLRYGNLTPALTELLDLQVHAFAAREAVVEPGGPRLTYREMWHSASRIAGGLQE
HGIGYGDRVAIRMPAGVRWVQAFLGALLSGAVPVLVPDGLAPGIAERVIADSAVDFVLGTGTRLPDGAAFIDDGAALGDL
AVLCYTGETPEPKGVELTNENLLSAVRSVVAALDLPTDGVRNLVLLPLSEAGGCVDQLLPTFAVGGTVVLAPDRAGLARA
LVAERVDMVSATPEIFAGLLPTLAELRADGVRTDGVLRVSSAGQRAERRRAPRPELPAALRELFPAARHWSVWGATETSG
IGLALDVTDADRTATVVDTAATDTATATVLGFPFGGTELALCGPRADTGYGELLCRGPNVSRRYWNDPESTADRFTGGWF
HTGDQVRIAPDGLVYRATA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44173; Mature: 44041

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQLVVEYPLTRARLCDNPLARGADGVLRYGNLTPALTELLDLQVHAFAAREAVVEPGG
CCCCEEEECCCHHHHHCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PRLTYREMWHSASRIAGGLQEHGIGYGDRVAIRMPAGVRWVQAFLGALLSGAVPVLVPDG
CCCHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCC
LAPGIAERVIADSAVDFVLGTGTRLPDGAAFIDDGAALGDLAVLCYTGETPEPKGVELTN
CCCHHHHHHHHHHHHHHEEECCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCEECH
ENLLSAVRSVVAALDLPTDGVRNLVLLPLSEAGGCVDQLLPTFAVGGTVVLAPDRAGLAR
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHH
ALVAERVDMVSATPEIFAGLLPTLAELRADGVRTDGVLRVSSAGQRAERRRAPRPELPAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHH
LRELFPAARHWSVWGATETSGIGLALDVTDADRTATVVDTAATDTATATVLGFPFGGTEL
HHHHHHHHHCCEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEE
ALCGPRADTGYGELLCRGPNVSRRYWNDPESTADRFTGGWFHTGDQVRIAPDGLVYRATA
EEECCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEECCCCEEEEECC
>Mature Secondary Structure 
SQQLVVEYPLTRARLCDNPLARGADGVLRYGNLTPALTELLDLQVHAFAAREAVVEPGG
CCCEEEECCCHHHHHCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PRLTYREMWHSASRIAGGLQEHGIGYGDRVAIRMPAGVRWVQAFLGALLSGAVPVLVPDG
CCCHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCC
LAPGIAERVIADSAVDFVLGTGTRLPDGAAFIDDGAALGDLAVLCYTGETPEPKGVELTN
CCCHHHHHHHHHHHHHHEEECCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCEECH
ENLLSAVRSVVAALDLPTDGVRNLVLLPLSEAGGCVDQLLPTFAVGGTVVLAPDRAGLAR
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHH
ALVAERVDMVSATPEIFAGLLPTLAELRADGVRTDGVLRVSSAGQRAERRRAPRPELPAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHH
LRELFPAARHWSVWGATETSGIGLALDVTDADRTATVVDTAATDTATATVLGFPFGGTEL
HHHHHHHHHCCEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEE
ALCGPRADTGYGELLCRGPNVSRRYWNDPESTADRFTGGWFHTGDQVRIAPDGLVYRATA
EEECCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA