| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026592
Identifier: 54026592
GI number: 54026592
Start: 4806392
End: 4806910
Strand: Reverse
Name: 54026592
Synonym: nfa46190
Alternate gene names: NA
Gene position: 4806910-4806392 (Counterclockwise)
Preceding gene: 54026593
Following gene: 54026591
Centisome position: 79.83
GC content: 75.53
Gene sequence:
>519_bases GTGAGCGCGGAATCGCTGCACGCCTCCGCCACCGCCCTGCTGGAGGGCTGGTCGCCGCCGACGGGACCCGAGCGGTCGGT GCGCGAGGCGATGCTCGCCTTTCTGGGCTCGGCGCCGCGCGGGTGTCTGCGGGAGCACGCCCCCGGCCACATCACCGCCT CGGCGGTGGTGTTCTCCCACGACGGCCGGGAGGTGCTGTTGACCCTGCACCCGCGGGTCGGCCGCTGGATCCAGCTCGGC GGGCACTGCGAGGAGCCGGACGAGACGGTGGCGGCCGCGGCGTTGCGCGAGGCCACCGAGGAGTCCGGCATCCCCGGCCT GCACCTCGAGCCCGGCCTCTACGGCGCCCAGGCCCACCCCATCACCTGTTCCCTCGGCCGTCCCACCCGCCACCTCGACC TCCTCTTCCGCCTGACCGCCCCACCCGGTGCCGTCCCGGTCCGCAGCCACGAGTCCACCGACCTGCGCTGGTGGCCGACC GACGCCCTCCCGCCGAACGCCGACGTCCTGCTGCGCTGA
Upstream 100 bases:
>100_bases CCGCGGACTGGAACCCCTTGGGCGCCATCGCGGTCGGCTACCCGACCGAAGAGCTCGCACCTCGTCCGCCGCGCGATCCC GGCGACGGGCTGGTCGAACG
Downstream 100 bases:
>100_bases CCGCTGCCCGGGCGGGCGCCGCGGTACCCCGGCGGCCCCTGCCCGGGTGCTGTCGTCTCGGCCGCTGTCGGAGCCCGCGC GGGTAACAGCTTTACAAATC
Product: hypothetical protein
Products: NA
Alternate protein names: Nudix Family Hydrolase; NTP Pyrophosphohydrolase; Hydrolase Nudix Family Protein; NUDIX Family Protein; LOW QUALITY PROTEIN NUDIX Hydrolase; Nudix Hydrolase Family Protein; ADP-Ribose Pyrophosphatase; (Di)Nucleoside Polyphosphate Hydrolase; (Di)Nucleoside Polyphosphate Hydrolase-Like Protein; Nudix Hydrolase; Nudix Superfamily Hydrolase
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSAESLHASATALLEGWSPPTGPERSVREAMLAFLGSAPRGCLREHAPGHITASAVVFSHDGREVLLTLHPRVGRWIQLG GHCEEPDETVAAAALREATEESGIPGLHLEPGLYGAQAHPITCSLGRPTRHLDLLFRLTAPPGAVPVRSHESTDLRWWPT DALPPNADVLLR
Sequences:
>Translated_172_residues MSAESLHASATALLEGWSPPTGPERSVREAMLAFLGSAPRGCLREHAPGHITASAVVFSHDGREVLLTLHPRVGRWIQLG GHCEEPDETVAAAALREATEESGIPGLHLEPGLYGAQAHPITCSLGRPTRHLDLLFRLTAPPGAVPVRSHESTDLRWWPT DALPPNADVLLR >Mature_171_residues SAESLHASATALLEGWSPPTGPERSVREAMLAFLGSAPRGCLREHAPGHITASAVVFSHDGREVLLTLHPRVGRWIQLGG HCEEPDETVAAAALREATEESGIPGLHLEPGLYGAQAHPITCSLGRPTRHLDLLFRLTAPPGAVPVRSHESTDLRWWPTD ALPPNADVLLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18470; Mature: 18339
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAESLHASATALLEGWSPPTGPERSVREAMLAFLGSAPRGCLREHAPGHITASAVVFSH CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEC DGREVLLTLHPRVGRWIQLGGHCEEPDETVAAAALREATEESGIPGLHLEPGLYGAQAHP CCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC ITCSLGRPTRHLDLLFRLTAPPGAVPVRSHESTDLRWWPTDALPPNADVLLR EEEECCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCEEEC >Mature Secondary Structure SAESLHASATALLEGWSPPTGPERSVREAMLAFLGSAPRGCLREHAPGHITASAVVFSH CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEC DGREVLLTLHPRVGRWIQLGGHCEEPDETVAAAALREATEESGIPGLHLEPGLYGAQAHP CCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC ITCSLGRPTRHLDLLFRLTAPPGAVPVRSHESTDLRWWPTDALPPNADVLLR EEEECCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA