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The map label for this gene is ydcN [C]

Identifier: 54026486

GI number: 54026486

Start: 4681769

End: 4682374

Strand: Reverse

Name: ydcN [C]

Synonym: nfa45130

Alternate gene names: 54026486

Gene position: 4682374-4681769 (Counterclockwise)

Preceding gene: 54026489

Following gene: 54026480

Centisome position: 77.76

GC content: 72.11

Gene sequence:

>606_bases
ATGGATCAGGCGCTCGAGGCGGTCGGCCCGCGGCTGCGCGCGCTGCGCAAACAGCGCGAGACCACCCTCGGCGAGCTCTC
CGCCGCCACCGGGATCTCGGTGAGCACGCTGTCGCGGCTCGAGTCCGGCGCACGGCGGCCCACCCTGGAACTGCTGCTGC
CGCTGGCCCGCGCGCACGGCGTGACCCTCGACGAACTCGTCGACGCCCCGCCCACCGGCGATCCCCGCGTCCACCTGCGT
CCGGTCACCCGCAACGGCATGACGATGCTGCCGCTGACCCGCCGCCCGGGCGGTATCCAGGCCTACAAGCTGATCATCCC
GCCGGACACCCGCCGCACCCCCGACCCGAAGACACACGAGGGCTACGAGTGGCTCTACGTGCTCAACGGGCGGCTGCGGT
TGATCCTCGGCGAGCACGATCTGGTGCTGGAGCCGGGCGAGGCCGCCGAATTCGATACCAGGGTGCCGCATTGGTTCGGC
GCCGCGGACGACCGGCCGGTGGAGTTCCTGAGCCTGTTCGGCAAGCAGGGCGAGCGGGCGCATCTGCGCGCCCGGCCCGC
CGTGCCGAAAACCGGTGACCGCCGTGCCGAAAACGGTGAGCACTGA

Upstream 100 bases:

>100_bases
GTCATCATGACCACCTCCTCGCCGGACACTGTGCCCCAGCTCCGGCATTATCGGCAAAGCAATTTGCCGGTATGGCAAAC
TGGGGTGCGTGGACGACGAC

Downstream 100 bases:

>100_bases
GGAGATCAGGACGTCCGCCGCTCCGGCGGCGCCTGCCAGTGCACAACCTTCACCGTGGTCATCTCGTCCAAGAGTTCCGG
GCCGTAACCGAATCCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; HTH-Type Transcriptional Regulator; Cupin 2 Barrel Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Helix-Turn-Helix Protein; Aldehyde Dehydrogenase-Like Protein; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELVDAPPTGDPRVHLR
PVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHEGYEWLYVLNGRLRLILGEHDLVLEPGEAAEFDTRVPHWFG
AADDRPVEFLSLFGKQGERAHLRARPAVPKTGDRRAENGEH

Sequences:

>Translated_201_residues
MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELVDAPPTGDPRVHLR
PVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHEGYEWLYVLNGRLRLILGEHDLVLEPGEAAEFDTRVPHWFG
AADDRPVEFLSLFGKQGERAHLRARPAVPKTGDRRAENGEH
>Mature_201_residues
MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELVDAPPTGDPRVHLR
PVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHEGYEWLYVLNGRLRLILGEHDLVLEPGEAAEFDTRVPHWFG
AADDRPVEFLSLFGKQGERAHLRARPAVPKTGDRRAENGEH

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22317; Mature: 22317

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
VTLDELVDAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHE
CCHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCC
GYEWLYVLNGRLRLILGEHDLVLEPGEAAEFDTRVPHWFGAADDRPVEFLSLFGKQGERA
CEEEEEEECCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCCEE
HLRARPAVPKTGDRRAENGEH
EEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
VTLDELVDAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRRTPDPKTHE
CCHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCC
GYEWLYVLNGRLRLILGEHDLVLEPGEAAEFDTRVPHWFGAADDRPVEFLSLFGKQGERA
CEEEEEEECCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCCEE
HLRARPAVPKTGDRRAENGEH
EEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA