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The map label for this gene is smpB

Identifier: 54026453

GI number: 54026453

Start: 4644275

End: 4644757

Strand: Reverse

Name: smpB

Synonym: nfa44800

Alternate gene names: 54026453

Gene position: 4644757-4644275 (Counterclockwise)

Preceding gene: 54026454

Following gene: 54026449

Centisome position: 77.14

GC content: 65.84

Gene sequence:

>483_bases
TTGACCGTTATGAAGGAGAAGGGGCGAAAGGTCATCGCGACCAACCGCCGGGCGCGGCACAACTACACGATCCTGGACAC
CTACGAGGCCGGGATCGTGCTGGTCGGTACCGAGGTCAAGAGTCTGCGCGAGGGCAAGGCCTCGCTGGTGGACGCCTTCG
CGACCGTCGACAACGGCGAGGTGTGGCTGCGCGGCCTGCACATCCCCGAGTTCAGCCACGGCACCTGGACCAATCATTCG
CCCCGCCGCGTGCGAAAGCTGCTGTTGCACAAGCGCGAGATCGAACGGCTGGTCGGTAAGTCGCGCGAGGGCAACCAGAC
GCTGGTGCCGCTGTCGATGTACTTCTCCGACGGCAAGGTCAAGGTCGAGCTGGCGTTGGCGCGCGGTAAGCAGGACTACG
ACAAGCGCCAGGATCTGGCCCGCCGCACCGCCGAACGCGAGGTGACCCGTGAGCTGGGCCGTCGCGTCAAGGGCATGCGC
TGA

Upstream 100 bases:

>100_bases
GGCCGCGTTCGCCGGCGTCCTCGTGCTCTACCTGCTGGTGCGCCCCGGCGGCTGAGCCCGGCCCGCCGGGGGAATAATTC
GGTTGCCGCGTCACTTAGAG

Downstream 100 bases:

>100_bases
TCCTCAGAGCCGCGCGCACGGCCCGGAGAAGGTGATGCGCTCGAGCGTCGGACCACGGTAGTCGGCGGCCAGCGTGCGCG
AACCCAACGGTGCGTCCGGG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTVMKEKGRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGEVWLRGLHIPEFSHGTWTNHS
PRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKVKVELALARGKQDYDKRQDLARRTAEREVTRELGRRVKGMR

Sequences:

>Translated_160_residues
MTVMKEKGRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGEVWLRGLHIPEFSHGTWTNHS
PRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKVKVELALARGKQDYDKRQDLARRTAEREVTRELGRRVKGMR
>Mature_159_residues
TVMKEKGRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGEVWLRGLHIPEFSHGTWTNHSP
RRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKVKVELALARGKQDYDKRQDLARRTAEREVTRELGRRVKGMR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=136, Percent_Identity=42.6470588235294, Blast_Score=109, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_NOCFA (Q5YR60)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_120695.1
- ProteinModelPortal:   Q5YR60
- SMR:   Q5YR60
- GeneID:   3111571
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa44800
- NMPDR:   fig|247156.1.peg.4306
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   NFAR247156:NFA44800-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18410; Mature: 18278

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVMKEKGRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGE
CCCCHHCCCEEEECCCCCCCCCEEEEECCCCEEEEECCHHHHHCCHHHHHHHHHHCCCCC
VWLRGLHIPEFSHGTWTNHSPRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKV
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEE
KVELALARGKQDYDKRQDLARRTAEREVTRELGRRVKGMR
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TVMKEKGRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGE
CCCHHCCCEEEECCCCCCCCCEEEEECCCCEEEEECCHHHHHCCHHHHHHHHHHCCCCC
VWLRGLHIPEFSHGTWTNHSPRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKV
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEE
KVELALARGKQDYDKRQDLARRTAEREVTRELGRRVKGMR
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA