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The map label for this gene is crtB [H]

Identifier: 54026369

GI number: 54026369

Start: 4557195

End: 4558547

Strand: Reverse

Name: crtB [H]

Synonym: nfa43980

Alternate gene names: 54026369

Gene position: 4558547-4557195 (Counterclockwise)

Preceding gene: 54026370

Following gene: 54026367

Centisome position: 75.71

GC content: 74.65

Gene sequence:

>1353_bases
ATGACGCGGCGTGAACTCGATGCCGCGGGCATCACCGACCCCGCCCTGCGCCACGCCTACACCCGGTGCCGCGCGCTGAA
CGCCGCGCACGGGCGCACCTATTTCCTGGCGACCCGGTTGCTGCCGCCGGACCGGCGGCCCGCGGTGCATGCGCTCTACG
GTTTCGCGCGGTATGTGGACGACCTGGTCGATCTGCCCGATCGGGACGCGCCCGGTTCCGGCCTCGCCGCGGACGCGCGC
ATCCGTGCCCACATCGACACGGCCGAGCGGGAACTCACCGCCGCGCTCGCCCGGTCGGTGCGCGTTCAACCGGCGCCCGC
TCAGCCGGTCGTGCCCGGCCAACCGGTCGTGTCCGCTCAGCCGGCTGGGCCCGGCCAACCGGTCGTGCCCGCTCAGCCGG
CCAGGCCCGGCCAACCGGTCGCGTCCGCTCAGCCGGCCAGGCCCGGCCAACCGGTCGCGTCCGCTCAGCTGGCCAGGCCC
GGCCAACCGGTCGCGTCCGCTCAGCCGATCGGGCCCGGCCAACCCGTCGTGCCCGCCCATTCGGCCGCGCCCGCCCAACC
CGTCGTGCCCGCTCAGCCGGTCGTGACCGCACTCGCCGACACCGTGCGCCGCCACCGTATCGACCCCGCGCTGTTCGCGG
CCTTCCTGACGTCCATGCGCATGGACCTGGAGGTCCGCGACTACCCGACCCGCGCCGCCCTCCAGCGCTACACCTACGGG
TCGGCTCAGGTGATCGGCCTGCAACTGCTGCCGGTCCTCGGCACCGTCACCGACACCGCCGTGGCCGCTCCGTTCGCCGC
CGCGCTCGGCGACGCCTTCCAGCTCACCAACTTCCTGCGCGACGTCGCCGAAGACCTCGACCGTGGCCGCGTCTATCTGC
CCGCCGACGAACTCGCCGCGCACGGTGTCGACCGGGATCGCCTGGCCTGGTGCCGCACCCGCGGCCGCCCCGACGCGGCC
GTCCGTGCCGCCCTCACCGGCCAGATCGCCATGACCCGGGCGGTCTACCGCACCGCCGAGCCCGGTATCGCCCTGCTCGA
CCCGATGGCCCGCCCCTGCGTGACCACCGCGTTCCGCCTCTACGCCGCCATCCTCGACCGCATCGAAGCCGCCGACCACA
ACGTCTTCGCCACCCGCGCCACCGTCGGCCGCACCCGCAAACTCGGCGTCGCCCTCCCGGCCCTCACCCGCGCCTGGTGG
TCGCGCCGCCCCACCCCTCGCCACACGGCACCCCCGCGCGCCCAGCATCGAGCTGGACCGATCCGAGACAGAGTGGGCGA
TGAGCGCACTGCCGGCGTGGCGACCGACCCCGAGATGCTCCTGATCACCGAGCAGGGCTTCGACGCGCACTGA

Upstream 100 bases:

>100_bases
GTCGGCGTGCCGACCGCCCTGATCTCCGGGCAACTCGCCGCGGACCGGATCACCGGCGTGGTGCGGGGGACCGCTCGGGT
GCGAGCGACGGGAGCCCGCC

Downstream 100 bases:

>100_bases
GGGCGCTCAACGCCTGAGCCGGTCAGCGCCCCCGAGGCGGTGGCCTGGCGTCACCGCTCGGTCGTGCCGGGCCGCAGGCG
CAGGGCCACCCAGGCGGCGA

Product: putative phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTRRELDAAGITDPALRHAYTRCRALNAAHGRTYFLATRLLPPDRRPAVHALYGFARYVDDLVDLPDRDAPGSGLAADAR
IRAHIDTAERELTAALARSVRVQPAPAQPVVPGQPVVSAQPAGPGQPVVPAQPARPGQPVASAQPARPGQPVASAQLARP
GQPVASAQPIGPGQPVVPAHSAAPAQPVVPAQPVVTALADTVRRHRIDPALFAAFLTSMRMDLEVRDYPTRAALQRYTYG
SAQVIGLQLLPVLGTVTDTAVAAPFAAALGDAFQLTNFLRDVAEDLDRGRVYLPADELAAHGVDRDRLAWCRTRGRPDAA
VRAALTGQIAMTRAVYRTAEPGIALLDPMARPCVTTAFRLYAAILDRIEAADHNVFATRATVGRTRKLGVALPALTRAWW
SRRPTPRHTAPPRAQHRAGPIRDRVGDERTAGVATDPEMLLITEQGFDAH

Sequences:

>Translated_450_residues
MTRRELDAAGITDPALRHAYTRCRALNAAHGRTYFLATRLLPPDRRPAVHALYGFARYVDDLVDLPDRDAPGSGLAADAR
IRAHIDTAERELTAALARSVRVQPAPAQPVVPGQPVVSAQPAGPGQPVVPAQPARPGQPVASAQPARPGQPVASAQLARP
GQPVASAQPIGPGQPVVPAHSAAPAQPVVPAQPVVTALADTVRRHRIDPALFAAFLTSMRMDLEVRDYPTRAALQRYTYG
SAQVIGLQLLPVLGTVTDTAVAAPFAAALGDAFQLTNFLRDVAEDLDRGRVYLPADELAAHGVDRDRLAWCRTRGRPDAA
VRAALTGQIAMTRAVYRTAEPGIALLDPMARPCVTTAFRLYAAILDRIEAADHNVFATRATVGRTRKLGVALPALTRAWW
SRRPTPRHTAPPRAQHRAGPIRDRVGDERTAGVATDPEMLLITEQGFDAH
>Mature_449_residues
TRRELDAAGITDPALRHAYTRCRALNAAHGRTYFLATRLLPPDRRPAVHALYGFARYVDDLVDLPDRDAPGSGLAADARI
RAHIDTAERELTAALARSVRVQPAPAQPVVPGQPVVSAQPAGPGQPVVPAQPARPGQPVASAQPARPGQPVASAQLARPG
QPVASAQPIGPGQPVVPAHSAAPAQPVVPAQPVVTALADTVRRHRIDPALFAAFLTSMRMDLEVRDYPTRAALQRYTYGS
AQVIGLQLLPVLGTVTDTAVAAPFAAALGDAFQLTNFLRDVAEDLDRGRVYLPADELAAHGVDRDRLAWCRTRGRPDAAV
RAALTGQIAMTRAVYRTAEPGIALLDPMARPCVTTAFRLYAAILDRIEAADHNVFATRATVGRTRKLGVALPALTRAWWS
RRPTPRHTAPPRAQHRAGPIRDRVGDERTAGVATDPEMLLITEQGFDAH

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 48146; Mature: 48015

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRELDAAGITDPALRHAYTRCRALNAAHGRTYFLATRLLPPDRRPAVHALYGFARYVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
DLVDLPDRDAPGSGLAADARIRAHIDTAERELTAALARSVRVQPAPAQPVVPGQPVVSAQ
HHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC
PAGPGQPVVPAQPARPGQPVASAQPARPGQPVASAQLARPGQPVASAQPIGPGQPVVPAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
SAAPAQPVVPAQPVVTALADTVRRHRIDPALFAAFLTSMRMDLEVRDYPTRAALQRYTYG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCC
SAQVIGLQLLPVLGTVTDTAVAAPFAAALGDAFQLTNFLRDVAEDLDRGRVYLPADELAA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHH
HGVDRDRLAWCRTRGRPDAAVRAALTGQIAMTRAVYRTAEPGIALLDPMARPCVTTAFRL
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHH
YAAILDRIEAADHNVFATRATVGRTRKLGVALPALTRAWWSRRPTPRHTAPPRAQHRAGP
HHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC
IRDRVGDERTAGVATDPEMLLITEQGFDAH
HHHHCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
TRRELDAAGITDPALRHAYTRCRALNAAHGRTYFLATRLLPPDRRPAVHALYGFARYVD
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
DLVDLPDRDAPGSGLAADARIRAHIDTAERELTAALARSVRVQPAPAQPVVPGQPVVSAQ
HHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC
PAGPGQPVVPAQPARPGQPVASAQPARPGQPVASAQLARPGQPVASAQPIGPGQPVVPAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
SAAPAQPVVPAQPVVTALADTVRRHRIDPALFAAFLTSMRMDLEVRDYPTRAALQRYTYG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCC
SAQVIGLQLLPVLGTVTDTAVAAPFAAALGDAFQLTNFLRDVAEDLDRGRVYLPADELAA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHH
HGVDRDRLAWCRTRGRPDAAVRAALTGQIAMTRAVYRTAEPGIALLDPMARPCVTTAFRL
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHH
YAAILDRIEAADHNVFATRATVGRTRKLGVALPALTRAWWSRRPTPRHTAPPRAQHRAGP
HHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC
IRDRVGDERTAGVATDPEMLLITEQGFDAH
HHHHCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8917308 [H]