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The map label for this gene is ykoU [H]

Identifier: 54026348

GI number: 54026348

Start: 4537947

End: 4538939

Strand: Reverse

Name: ykoU [H]

Synonym: nfa43770

Alternate gene names: 54026348

Gene position: 4538939-4537947 (Counterclockwise)

Preceding gene: 54026350

Following gene: 54026346

Centisome position: 75.38

GC content: 73.41

Gene sequence:

>993_bases
ATGGTTGACCCGCCCTCCGCGCCGGGGCAAGGTGGGGCGATGAGCAGCGACGAGGAGCGCGCCGGCGTCGGGATGACCAA
TCTGGACCAACCGCTGTTCGACGGCGCGCAGGCCACCAAGCGCGACCTCGTCGACTACCTGGAGGCCGTCGCCGACCAAC
TGGTCGGGCAGCTGCGGGACCGTCCGCTGTCGGTGGTGCGGGTCCGGCCGGGCCAGGAGAGGTTCATGCAGAAGAACCTC
CCGAAGTACGCCCCGGAGTGGGTGCCGCGGGTCACCACCTGGGCGGCCAGCGCCCAGCGCACGATCACCTACCCGGTCTG
CCAGGACCCGCGCACCCTGCTCTGGTTCGGCAATCAGCGCGCGGTCGAATACCACCCGACCCTGCTCACCACCGACCCCG
AGGTCGGCCAGACCCACTTGGTCCTCGACCTGGATCCCTCGCCCGGCCAGACCTTCCGCCACGCCGTCCTCGCCGCCCAG
CTCATCCGCACGGCCCTGGCGGCCGACGGCCTGTCCGCGGCGGTGAAGACCAGCGGGGCCAAGGGCGTGCACGTGTTCGT
CCCGCTCCGGCCCGGCATCCCGCTCGAGGACGCGGCCGCCGCCACCCGCGCCGTGGCGGCCCGTGCCGAACGCCTCGACC
CGGCGCTCGCCACCACCGCGTTCATCCGCGACGACCGGGAGGGCAAGGTCTTCCTCGATGCCACCCGCTCCGGCGGCGCG
ACCGTGGTCGCCACCTACAGCCCGCGCATCCGCCCCGGCGTCCCGGTGTCCTTCCCGGTCACCTGGGACGAGCTGCCCGA
CATCACGCCGACCGACTTCACCATCGACACGGTGCCCGGCCTGCTCGGCGACCGGGACCCGTGGACCGCCCGCATGCCCG
CACCGCAGTCCCTTCCCGCCGACCTCGTCGAGGAGGGGCACACCATCCCGGTCGCGCGCGTCCAGGCGATGCACGAAGGC
AAACGCCGGGCGCGAGCGCGGCGCGAAGGCTGA

Upstream 100 bases:

>100_bases
GCGCGAGCACCGTCACGACGCACTCCCCGCGGCACCGGGCGATGACATCCAACTCACGGATCAAGTCTGGCGCGGATGCC
GGTTCCGCGCCAACCCGCCG

Downstream 100 bases:

>100_bases
GTTCCGGATACCGCGGCGATTCCGGATATCGCGTGATCGCGGACCGTCGCCGTGCTCACCCGGCGACCCAGGACAGCAGC
CGTCCCCGGGACCAGCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MVDPPSAPGQGGAMSSDEERAGVGMTNLDQPLFDGAQATKRDLVDYLEAVADQLVGQLRDRPLSVVRVRPGQERFMQKNL
PKYAPEWVPRVTTWAASAQRTITYPVCQDPRTLLWFGNQRAVEYHPTLLTTDPEVGQTHLVLDLDPSPGQTFRHAVLAAQ
LIRTALAADGLSAAVKTSGAKGVHVFVPLRPGIPLEDAAAATRAVAARAERLDPALATTAFIRDDREGKVFLDATRSGGA
TVVATYSPRIRPGVPVSFPVTWDELPDITPTDFTIDTVPGLLGDRDPWTARMPAPQSLPADLVEEGHTIPVARVQAMHEG
KRRARARREG

Sequences:

>Translated_330_residues
MVDPPSAPGQGGAMSSDEERAGVGMTNLDQPLFDGAQATKRDLVDYLEAVADQLVGQLRDRPLSVVRVRPGQERFMQKNL
PKYAPEWVPRVTTWAASAQRTITYPVCQDPRTLLWFGNQRAVEYHPTLLTTDPEVGQTHLVLDLDPSPGQTFRHAVLAAQ
LIRTALAADGLSAAVKTSGAKGVHVFVPLRPGIPLEDAAAATRAVAARAERLDPALATTAFIRDDREGKVFLDATRSGGA
TVVATYSPRIRPGVPVSFPVTWDELPDITPTDFTIDTVPGLLGDRDPWTARMPAPQSLPADLVEEGHTIPVARVQAMHEG
KRRARARREG
>Mature_330_residues
MVDPPSAPGQGGAMSSDEERAGVGMTNLDQPLFDGAQATKRDLVDYLEAVADQLVGQLRDRPLSVVRVRPGQERFMQKNL
PKYAPEWVPRVTTWAASAQRTITYPVCQDPRTLLWFGNQRAVEYHPTLLTTDPEVGQTHLVLDLDPSPGQTFRHAVLAAQ
LIRTALAADGLSAAVKTSGAKGVHVFVPLRPGIPLEDAAAATRAVAARAERLDPALATTAFIRDDREGKVFLDATRSGGA
TVVATYSPRIRPGVPVSFPVTWDELPDITPTDFTIDTVPGLLGDRDPWTARMPAPQSLPADLVEEGHTIPVARVQAMHEG
KRRARARREG

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35765; Mature: 35765

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDPPSAPGQGGAMSSDEERAGVGMTNLDQPLFDGAQATKRDLVDYLEAVADQLVGQLRD
CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RPLSVVRVRPGQERFMQKNLPKYAPEWVPRVTTWAASAQRTITYPVCQDPRTLLWFGNQR
CCEEEEEECCCHHHHHHHCCCCCCHHHHCHHHHHHCCCCCEEEECCCCCCCEEEEECCCC
AVEYHPTLLTTDPEVGQTHLVLDLDPSPGQTFRHAVLAAQLIRTALAADGLSAAVKTSGA
EEEECCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
KGVHVFVPLRPGIPLEDAAAATRAVAARAERLDPALATTAFIRDDREGKVFLDATRSGGA
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCE
TVVATYSPRIRPGVPVSFPVTWDELPDITPTDFTIDTVPGLLGDRDPWTARMPAPQSLPA
EEEEECCCCCCCCCCEECCCCHHHCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCH
DLVEEGHTIPVARVQAMHEGKRRARARREG
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDPPSAPGQGGAMSSDEERAGVGMTNLDQPLFDGAQATKRDLVDYLEAVADQLVGQLRD
CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RPLSVVRVRPGQERFMQKNLPKYAPEWVPRVTTWAASAQRTITYPVCQDPRTLLWFGNQR
CCEEEEEECCCHHHHHHHCCCCCCHHHHCHHHHHHCCCCCEEEECCCCCCCEEEEECCCC
AVEYHPTLLTTDPEVGQTHLVLDLDPSPGQTFRHAVLAAQLIRTALAADGLSAAVKTSGA
EEEECCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
KGVHVFVPLRPGIPLEDAAAATRAVAARAERLDPALATTAFIRDDREGKVFLDATRSGGA
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCE
TVVATYSPRIRPGVPVSFPVTWDELPDITPTDFTIDTVPGLLGDRDPWTARMPAPQSLPA
EEEEECCCCCCCCCCEECCCCHHHCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCH
DLVEEGHTIPVARVQAMHEGKRRARARREG
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]