| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is kbl [C]
Identifier: 54026294
GI number: 54026294
Start: 4481163
End: 4482584
Strand: Reverse
Name: kbl [C]
Synonym: nfa43230
Alternate gene names: 54026294
Gene position: 4482584-4481163 (Counterclockwise)
Preceding gene: 54026295
Following gene: 54026292
Centisome position: 74.45
GC content: 73.07
Gene sequence:
>1422_bases GTGAGCGAGTCCGCCCGCGAGTTGGCGCGCAAGTTGTTGTCCGCCGGCGGCGCCGCCGCGGGAGCGCCCCCCACCGGCGG GCCGGGCAGGCCGGGGTCGGGCGTGCCCGCCGCGGCCCCCGCGCGCCCCGCCGCCACTCCGGGACGGCCGGGCGGCACGG CGGCCCGTCCCCGCCGCGGCCCCGGCAAGCAGTTCGCCGACCACCCCGAGGTGGCCGCGACCGTGGCCAAGCAGGCCGCG ATCGACAAGCTCTACGGCGACAGCGACATGCCCAATCCGCTGTTCCTGGTGCGGTCGGGCCCCAACGACGCCACGATCCG TGCCGACGATCGTGACCTGATCAACTTCAGCGCCTACAACTACCTCGGCCTGGCCAACCATCCCCGGGTGGTGCGCGGCG CGAAGGAGGCGCTCGACCGCTACGGCGCGTCCGCCTCGGCCAGCCGCATCATCGCCGGGGAGATCCCGCTCTACCGTGAG CTGGAGGCCAGGCTGGCCGCACTCTACGGTGTCGGCGACGCCATGATCACCACCAGCGGCTACCTCACCAACGCGGGCGC GCTCGGCTTCCTGCTGCGCGAGGGCGACGTGGCGGTGTGCGATGCGCTGATCCACGGCAGCGTGGTCTCGGGGACACAAT GGTCGGGGTGCCGCCGGATCACCTTCCGGCACAACGATCCCGACGCGCTGCGCGCCGTCCTGCGGATGTCGCGCGCGGGC TTCGACCGCGCCCTGGTGGTGCTGGAGGGGCACTACAGCATGGACGGCACCGTCGGCCGGGTCGACGAACTGGCCGCCGT GGCACGGGAATACGACTGTGCCGTGATGGTCGACGAGGCGCACTCGTTCGGCGTGTTCGGCGACCGTGGCCACGGCATCC GCGAGCACTACCGGATGCCCGCCGACGCGGTGGACATCTGGATGGGCACGCTGTCGAAGGCGCTGGGCAGTTGCGGCGGG TTCCTGGCCGCCGACGCCGACCTCATCCGCGCGATGAAGGCCGCGGCACCGGGCATCGCGATGCTGACCGGCGGGCCCGC ACCGGCCGCGATTGGCGCCGCGCTGGCCGCGCTCGACGTGCTCGCGGACGAACCCGAGCGCCTGACCCGCCTGTGGGCCA ACGCGAAACAGTTCACCGCGCTGCTCACCGAACGCGGCCTCGACCTGGGCAGCTCGGAGGGCACGCCGATCTGCCCGGTG ATCGTGCCCGGTGAGGTGCGCTCCGGATTCGTCTCCTCCTACCTGCTGCAGCGCGGGGTGTACGCGGGCAACATCTCCGC GCCCGCGGTGCCCGCCGGTCAGGAGCGGCTGCGGTTCTTCCTCACCAGCGAACACACAGACGAGCAGCTGGTCACCGCGG CGGATCTGCTCGCCGAGGCCATCGGTCACGCGCGGCACCTGCCCGACCCGACCGTGCAGTAG
Upstream 100 bases:
>100_bases CGGTAGCGCCGGGGCCGAACGGCGGGACACCCGATCCGGACGGCGCGGCGGTGGCGCCGAACGGTGCGGCGGACGCAGCG GCCCCCGCGGAGGTGCGGTC
Downstream 100 bases:
>100_bases TGCGAGAGCCCGGCCGGGCCCTGTTCCCCCCTCCTGGATCAGGGACCGGCCGGGCTGGAACAAACCATCCCTCGGGGGTC TTGACAGGGGCTTACAGAGC
Product: putative 2-amino-3-ketobutyrate CoA ligase
Products: NA
Alternate protein names: AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; L-alanine--pimeloyl-CoA ligase [H]
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MSESARELARKLLSAGGAAAGAPPTGGPGRPGSGVPAAAPARPAATPGRPGGTAARPRRGPGKQFADHPEVAATVAKQAA IDKLYGDSDMPNPLFLVRSGPNDATIRADDRDLINFSAYNYLGLANHPRVVRGAKEALDRYGASASASRIIAGEIPLYRE LEARLAALYGVGDAMITTSGYLTNAGALGFLLREGDVAVCDALIHGSVVSGTQWSGCRRITFRHNDPDALRAVLRMSRAG FDRALVVLEGHYSMDGTVGRVDELAAVAREYDCAVMVDEAHSFGVFGDRGHGIREHYRMPADAVDIWMGTLSKALGSCGG FLAADADLIRAMKAAAPGIAMLTGGPAPAAIGAALAALDVLADEPERLTRLWANAKQFTALLTERGLDLGSSEGTPICPV IVPGEVRSGFVSSYLLQRGVYAGNISAPAVPAGQERLRFFLTSEHTDEQLVTAADLLAEAIGHARHLPDPTVQ
Sequences:
>Translated_473_residues MSESARELARKLLSAGGAAAGAPPTGGPGRPGSGVPAAAPARPAATPGRPGGTAARPRRGPGKQFADHPEVAATVAKQAA IDKLYGDSDMPNPLFLVRSGPNDATIRADDRDLINFSAYNYLGLANHPRVVRGAKEALDRYGASASASRIIAGEIPLYRE LEARLAALYGVGDAMITTSGYLTNAGALGFLLREGDVAVCDALIHGSVVSGTQWSGCRRITFRHNDPDALRAVLRMSRAG FDRALVVLEGHYSMDGTVGRVDELAAVAREYDCAVMVDEAHSFGVFGDRGHGIREHYRMPADAVDIWMGTLSKALGSCGG FLAADADLIRAMKAAAPGIAMLTGGPAPAAIGAALAALDVLADEPERLTRLWANAKQFTALLTERGLDLGSSEGTPICPV IVPGEVRSGFVSSYLLQRGVYAGNISAPAVPAGQERLRFFLTSEHTDEQLVTAADLLAEAIGHARHLPDPTVQ >Mature_472_residues SESARELARKLLSAGGAAAGAPPTGGPGRPGSGVPAAAPARPAATPGRPGGTAARPRRGPGKQFADHPEVAATVAKQAAI DKLYGDSDMPNPLFLVRSGPNDATIRADDRDLINFSAYNYLGLANHPRVVRGAKEALDRYGASASASRIIAGEIPLYREL EARLAALYGVGDAMITTSGYLTNAGALGFLLREGDVAVCDALIHGSVVSGTQWSGCRRITFRHNDPDALRAVLRMSRAGF DRALVVLEGHYSMDGTVGRVDELAAVAREYDCAVMVDEAHSFGVFGDRGHGIREHYRMPADAVDIWMGTLSKALGSCGGF LAADADLIRAMKAAAPGIAMLTGGPAPAAIGAALAALDVLADEPERLTRLWANAKQFTALLTERGLDLGSSEGTPICPVI VPGEVRSGFVSSYLLQRGVYAGNISAPAVPAGQERLRFFLTSEHTDEQLVTAADLLAEAIGHARHLPDPTVQ
Specific function: Catalyzes the decarboxylative condensation of pimeloyl- CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA [H]
COG id: COG0156
COG function: function code H; 7-keto-8-aminopelargonate synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI83977442, Length=352, Percent_Identity=32.6704545454545, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI83977440, Length=352, Percent_Identity=32.6704545454545, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI83977444, Length=352, Percent_Identity=32.6704545454545, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI119220554, Length=403, Percent_Identity=28.287841191067, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI7657118, Length=365, Percent_Identity=31.2328767123288, Blast_Score=168, Evalue=9e-42, Organism=Homo sapiens, GI284448556, Length=348, Percent_Identity=31.0344827586207, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI4758668, Length=376, Percent_Identity=28.1914893617021, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI4502025, Length=341, Percent_Identity=32.5513196480938, Blast_Score=144, Evalue=1e-34, Organism=Homo sapiens, GI40316939, Length=341, Percent_Identity=32.5513196480938, Blast_Score=144, Evalue=1e-34, Organism=Homo sapiens, GI5454084, Length=287, Percent_Identity=28.9198606271777, Blast_Score=128, Evalue=9e-30, Organism=Escherichia coli, GI1790046, Length=355, Percent_Identity=34.3661971830986, Blast_Score=197, Evalue=9e-52, Organism=Escherichia coli, GI1786993, Length=340, Percent_Identity=29.7058823529412, Blast_Score=126, Evalue=3e-30, Organism=Caenorhabditis elegans, GI71994529, Length=363, Percent_Identity=30.0275482093664, Blast_Score=179, Evalue=3e-45, Organism=Caenorhabditis elegans, GI32566772, Length=371, Percent_Identity=28.5714285714286, Blast_Score=169, Evalue=4e-42, Organism=Caenorhabditis elegans, GI17560912, Length=354, Percent_Identity=28.5310734463277, Blast_Score=157, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17560914, Length=354, Percent_Identity=28.5310734463277, Blast_Score=156, Evalue=2e-38, Organism=Caenorhabditis elegans, GI71982625, Length=392, Percent_Identity=24.4897959183673, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71982617, Length=352, Percent_Identity=25, Blast_Score=117, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6320267, Length=352, Percent_Identity=28.125, Blast_Score=160, Evalue=4e-40, Organism=Saccharomyces cerevisiae, GI6320438, Length=370, Percent_Identity=27.8378378378378, Blast_Score=139, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6323954, Length=271, Percent_Identity=25.830258302583, Blast_Score=97, Evalue=6e-21, Organism=Drosophila melanogaster, GI24662918, Length=366, Percent_Identity=31.6939890710383, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI17137420, Length=458, Percent_Identity=30.7860262008734, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI17136286, Length=378, Percent_Identity=29.6296296296296, Blast_Score=165, Evalue=6e-41, Organism=Drosophila melanogaster, GI24653280, Length=326, Percent_Identity=26.3803680981595, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24653276, Length=326, Percent_Identity=26.3803680981595, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24653278, Length=326, Percent_Identity=26.3803680981595, Blast_Score=127, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001917 - InterPro: IPR004839 - InterPro: IPR004723 - InterPro: IPR010962 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.3.1.29; =2.3.1.47 [H]
Molecular weight: Translated: 49402; Mature: 49271
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESARELARKLLSAGGAAAGAPPTGGPGRPGSGVPAAAPARPAATPGRPGGTAARPRRG CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGKQFADHPEVAATVAKQAAIDKLYGDSDMPNPLFLVRSGPNDATIRADDRDLINFSAYN CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEECCCCEEEECCCC YLGLANHPRVVRGAKEALDRYGASASASRIIAGEIPLYRELEARLAALYGVGDAMITTSG CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEECCC YLTNAGALGFLLREGDVAVCDALIHGSVVSGTQWSGCRRITFRHNDPDALRAVLRMSRAG CEECCCHHEEEEECCCHHHHHHHHHCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCC FDRALVVLEGHYSMDGTVGRVDELAAVAREYDCAVMVDEAHSFGVFGDRGHGIREHYRMP CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHCCC ADAVDIWMGTLSKALGSCGGFLAADADLIRAMKAAAPGIAMLTGGPAPAAIGAALAALDV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH LADEPERLTRLWANAKQFTALLTERGLDLGSSEGTPICPVIVPGEVRSGFVSSYLLQRGV HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC YAGNISAPAVPAGQERLRFFLTSEHTDEQLVTAADLLAEAIGHARHLPDPTVQ CCCCCCCCCCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SESARELARKLLSAGGAAAGAPPTGGPGRPGSGVPAAAPARPAATPGRPGGTAARPRRG CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGKQFADHPEVAATVAKQAAIDKLYGDSDMPNPLFLVRSGPNDATIRADDRDLINFSAYN CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEECCCCEEEECCCC YLGLANHPRVVRGAKEALDRYGASASASRIIAGEIPLYRELEARLAALYGVGDAMITTSG CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEECCC YLTNAGALGFLLREGDVAVCDALIHGSVVSGTQWSGCRRITFRHNDPDALRAVLRMSRAG CEECCCHHEEEEECCCHHHHHHHHHCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCC FDRALVVLEGHYSMDGTVGRVDELAAVAREYDCAVMVDEAHSFGVFGDRGHGIREHYRMP CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHCCC ADAVDIWMGTLSKALGSCGGFLAADADLIRAMKAAAPGIAMLTGGPAPAAIGAALAALDV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH LADEPERLTRLWANAKQFTALLTERGLDLGSSEGTPICPVIVPGEVRSGFVSSYLLQRGV HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC YAGNISAPAVPAGQERLRFFLTSEHTDEQLVTAADLLAEAIGHARHLPDPTVQ CCCCCCCCCCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA