| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026246
Identifier: 54026246
GI number: 54026246
Start: 4427512
End: 4428333
Strand: Reverse
Name: 54026246
Synonym: nfa42750
Alternate gene names: NA
Gene position: 4428333-4427512 (Counterclockwise)
Preceding gene: 54026247
Following gene: 54026245
Centisome position: 73.55
GC content: 71.65
Gene sequence:
>822_bases ATGACTATTTCGTCCGTGTTGACGGCCCCGGCTCGACCGACGGAATCCGGGGGGCAGCGGTACGCGTTGGTGGTCGCCTC CGACGCCGAGCACCGCGAGGCGGCGCAGCGCCTGCGCTACCGAGTGTTCGCCGACGAACCCGGCTTCCGGATCCCCGACA CCGGCACCGGGCTCGACGCCGATCGGTTCGACGAGCACTGCGATCACCTGCTCGTCCGGGACGAGCGGACCGGGGCGTTC GTCGGCTGCTACCGGATGCTCCCGCCGGACAAGGCTGCCGGGGCGGGCGGGTACTACACGGCCACGGAATTCGACCTGAC CCGGCTCGACCCGCACGGGCGCCGGATCGTGGAGATGGGCCGCGCCTGCGTGGTGCCCGAGCACCGCAACGGTTCGGTGC TCACCCTCATGTGGGCGGGCATCCTGCACTACATCCAGCTCACCGGCTACGACTGGGTGATGGGCTGCGTGTCGGTGCCC ATGCAGAACAGCCCCACCGATCTCGCGGGTGTGAACGTGCGCGGCGTGCGAGACCTGCTGCTGAGCAAGCACGCCTGCGA GCCGCGGCACCGCGTCCGCCCGTACCACCCGGTGGTGGTCGACGGGCGCGGCCTCGACGACCTGACCCCGCCCGCCCGGC CCACGCTGCCGCCACTGCTGCGCGGCTACCTGCGCCTGGGCGCGCAGATCTGCGGTGAGCCCGCGCACGACCCGGATTTC GCGGTCGCCGACTTCGTCGCCCTGCTCGGGCTGGACACCATCAACACCCGCTACCTGGAACGCTTGCAGGGCGCCGCGAC GGCCTTCGACGGGGGACGGTGA
Upstream 100 bases:
>100_bases GTGAACGCCCGGTGTGACCGGCGTCTCGTTCACCGAACCGGCATTCCGCCGACACTTCGAGGTCGCTCCGGCGCAGTCTG GGGCTGGCTTCATCACGGAT
Downstream 100 bases:
>100_bases GGACCGTGGTGTTCGACGCGCCGTTGGCGAAGGACGCACACAGCTGGATGCCGTCGAGCCCGTGCGGGCCCGCCTGCATC GAGCGCACCGACGAGGTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Hemolysin; Hemolysin-Like Protein; Ornithine-Acyl(Acyl Carrier Protein) N-Acyltransferase; Phospholipid/Glycerol Acyltransferase; Ornithine-Acyl(Acyl Carrier Protein) N- Acyltransferase; Phosphohistidine Phosphatase SixA; Acyltransferase Domain Protein; Hemolysin Protein; Acyl-CoA N-Acyltransferases Superfamily Protein; Ornithine-Acyl N-Acyltransferase
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MTISSVLTAPARPTESGGQRYALVVASDAEHREAAQRLRYRVFADEPGFRIPDTGTGLDADRFDEHCDHLLVRDERTGAF VGCYRMLPPDKAAGAGGYYTATEFDLTRLDPHGRRIVEMGRACVVPEHRNGSVLTLMWAGILHYIQLTGYDWVMGCVSVP MQNSPTDLAGVNVRGVRDLLLSKHACEPRHRVRPYHPVVVDGRGLDDLTPPARPTLPPLLRGYLRLGAQICGEPAHDPDF AVADFVALLGLDTINTRYLERLQGAATAFDGGR
Sequences:
>Translated_273_residues MTISSVLTAPARPTESGGQRYALVVASDAEHREAAQRLRYRVFADEPGFRIPDTGTGLDADRFDEHCDHLLVRDERTGAF VGCYRMLPPDKAAGAGGYYTATEFDLTRLDPHGRRIVEMGRACVVPEHRNGSVLTLMWAGILHYIQLTGYDWVMGCVSVP MQNSPTDLAGVNVRGVRDLLLSKHACEPRHRVRPYHPVVVDGRGLDDLTPPARPTLPPLLRGYLRLGAQICGEPAHDPDF AVADFVALLGLDTINTRYLERLQGAATAFDGGR >Mature_272_residues TISSVLTAPARPTESGGQRYALVVASDAEHREAAQRLRYRVFADEPGFRIPDTGTGLDADRFDEHCDHLLVRDERTGAFV GCYRMLPPDKAAGAGGYYTATEFDLTRLDPHGRRIVEMGRACVVPEHRNGSVLTLMWAGILHYIQLTGYDWVMGCVSVPM QNSPTDLAGVNVRGVRDLLLSKHACEPRHRVRPYHPVVVDGRGLDDLTPPARPTLPPLLRGYLRLGAQICGEPAHDPDFA VADFVALLGLDTINTRYLERLQGAATAFDGGR
Specific function: Unknown
COG id: COG3176
COG function: function code R; Putative hemolysin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29985; Mature: 29854
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISSVLTAPARPTESGGQRYALVVASDAEHREAAQRLRYRVFADEPGFRIPDTGTGLDA CCCHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCH DRFDEHCDHLLVRDERTGAFVGCYRMLPPDKAAGAGGYYTATEFDLTRLDPHGRRIVEMG HHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHCC RACVVPEHRNGSVLTLMWAGILHYIQLTGYDWVMGCVSVPMQNSPTDLAGVNVRGVRDLL CEEECCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH LSKHACEPRHRVRPYHPVVVDGRGLDDLTPPARPTLPPLLRGYLRLGAQICGEPAHDPDF HHHHCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH AVADFVALLGLDTINTRYLERLQGAATAFDGGR HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TISSVLTAPARPTESGGQRYALVVASDAEHREAAQRLRYRVFADEPGFRIPDTGTGLDA CCHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCH DRFDEHCDHLLVRDERTGAFVGCYRMLPPDKAAGAGGYYTATEFDLTRLDPHGRRIVEMG HHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHCC RACVVPEHRNGSVLTLMWAGILHYIQLTGYDWVMGCVSVPMQNSPTDLAGVNVRGVRDLL CEEECCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH LSKHACEPRHRVRPYHPVVVDGRGLDDLTPPARPTLPPLLRGYLRLGAQICGEPAHDPDF HHHHCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH AVADFVALLGLDTINTRYLERLQGAATAFDGGR HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA