| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026169
Identifier: 54026169
GI number: 54026169
Start: 4348658
End: 4349539
Strand: Reverse
Name: 54026169
Synonym: nfa41980
Alternate gene names: NA
Gene position: 4349539-4348658 (Counterclockwise)
Preceding gene: 54026170
Following gene: 54026166
Centisome position: 72.24
GC content: 73.58
Gene sequence:
>882_bases GTGAGTAATGCGAACTACCTTCTCGAGCCGCAGACGCTGCGGCTGCGCGGCTCGGGCGGGCTCGAGCTGGCCGCCGACCT GTTCGGCCCCGAGGACGGGCCGCTGGTGATCTTCCTGCACGGCGGCGGCCAGACTCGGCACTCCTGGAAACGCACCGGCG CCGCGCTGGCCGCGGGCGGACTGCGGGTGGTCACCCTGGACGCGCGTGGCCACGGCGACAGCCAGTGGGCCCCCGACCGC GACTACAGCCGCGCGGTGATGGTGGCGGATCTGCTCGCGGTGCTCGACCAACTCGGCGCGACCCCCGAGCGGGGTGCCGT GGTGGTGGGCGCCAGCATGGGTGGCATCACCGGCCTGCTGGCCACCGCGCAGCCGGGCGGCGCCGCGATTCGCGCGCTGG TCCTGGTCGACATCGTCACCCGGCCGCAGCCCGAGGGCGTCGAGCGGGTGATGACCTTCCTGGGCAAGCACCGCGACGGC TTCGACACCGTCGAGCAGGCCGCCGACGCGGTCGCGGCCTATCTGCCGCACCGCCCCCGGCCGAAGAACCACGACGGCCT GCTGCGCAACCTGCGCCACCGCGACGGCCGCTGGTACTGGCACTGGGATCCGGACATGATCGACGGCCGGACCGCCGACG CCGATACCGACAGCATGGCCGCGCTGCTCGAGCCCGCCGCCCGCGCGCTCACCATCCCGGTACTGCTGGTGCGCGGCCGG ATGTCGGATGTGGTGAGCGAGGAGGCGGTCGCCGAATTCCTGGAGCAGGTGCCGCACGCGCAGGTGGTGGAGATCGGCAA CGCCGCGCACACCGCGGCGAGCGACGACAACGACGCCTTCACCGACGCCGTCGCGGAGTTCGTGCTCGCCGCGGCGCGCT GA
Upstream 100 bases:
>100_bases GGACTGCTGACCTGTCGCGACGCCGGGCCGGCGGACAGCCGCCCGGCCCGGCGCGCAGGGGGGACTGTGAGGAAGCACTC ATCTGTGCGATCCTCGGATC
Downstream 100 bases:
>100_bases TCCGCGGCGGTCAGAACCGGGGCGGGCGCTTCTGCACGAACGCGTCCACACCCTCCCGGCCCGCCGGGCTGTTCGCGGCC GCGGCGATGCCGTCCCGCTC
Product: putative hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family Protein; Hydrolase Alpha/Beta Hydrolase Fold Family Protein; Peroxidase BpoB; Hydrolase Alpha/Beta Fold Family; Peroxidase BpoA; Hydrolase Of Alpha/Beta Fold Superfamily; Non-Heme Peroxidase; Alpha/Beta Hydrolase Fold Family; Peroxiredoxin; Non-Haem Bromoperoxidase; Cation Diffusion Facilitator Family Transporter; Alpha/Beta Family Hydrolase
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSNANYLLEPQTLRLRGSGGLELAADLFGPEDGPLVIFLHGGGQTRHSWKRTGAALAAGGLRVVTLDARGHGDSQWAPDR DYSRAVMVADLLAVLDQLGATPERGAVVVGASMGGITGLLATAQPGGAAIRALVLVDIVTRPQPEGVERVMTFLGKHRDG FDTVEQAADAVAAYLPHRPRPKNHDGLLRNLRHRDGRWYWHWDPDMIDGRTADADTDSMAALLEPAARALTIPVLLVRGR MSDVVSEEAVAEFLEQVPHAQVVEIGNAAHTAASDDNDAFTDAVAEFVLAAAR
Sequences:
>Translated_293_residues MSNANYLLEPQTLRLRGSGGLELAADLFGPEDGPLVIFLHGGGQTRHSWKRTGAALAAGGLRVVTLDARGHGDSQWAPDR DYSRAVMVADLLAVLDQLGATPERGAVVVGASMGGITGLLATAQPGGAAIRALVLVDIVTRPQPEGVERVMTFLGKHRDG FDTVEQAADAVAAYLPHRPRPKNHDGLLRNLRHRDGRWYWHWDPDMIDGRTADADTDSMAALLEPAARALTIPVLLVRGR MSDVVSEEAVAEFLEQVPHAQVVEIGNAAHTAASDDNDAFTDAVAEFVLAAAR >Mature_292_residues SNANYLLEPQTLRLRGSGGLELAADLFGPEDGPLVIFLHGGGQTRHSWKRTGAALAAGGLRVVTLDARGHGDSQWAPDRD YSRAVMVADLLAVLDQLGATPERGAVVVGASMGGITGLLATAQPGGAAIRALVLVDIVTRPQPEGVERVMTFLGKHRDGF DTVEQAADAVAAYLPHRPRPKNHDGLLRNLRHRDGRWYWHWDPDMIDGRTADADTDSMAALLEPAARALTIPVLLVRGRM SDVVSEEAVAEFLEQVPHAQVVEIGNAAHTAASDDNDAFTDAVAEFVLAAAR
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI23200008, Length=274, Percent_Identity=30.6569343065693, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI23200012, Length=274, Percent_Identity=30.6569343065693, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI223941839, Length=107, Percent_Identity=42.0560747663551, Blast_Score=66, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17551890, Length=138, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31266; Mature: 31134
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNANYLLEPQTLRLRGSGGLELAADLFGPEDGPLVIFLHGGGQTRHSWKRTGAALAAGG CCCCCEEECCCEEEEECCCCCEEHHHHCCCCCCCEEEEEECCCCCHHHHHHHCHHHCCCC LRVVTLDARGHGDSQWAPDRDYSRAVMVADLLAVLDQLGATPERGAVVVGASMGGITGLL EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHE ATAQPGGAAIRALVLVDIVTRPQPEGVERVMTFLGKHRDGFDTVEQAADAVAAYLPHRPR ECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC PKNHDGLLRNLRHRDGRWYWHWDPDMIDGRTADADTDSMAALLEPAARALTIPVLLVRGR CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MSDVVSEEAVAEFLEQVPHAQVVEIGNAAHTAASDDNDAFTDAVAEFVLAAAR HHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SNANYLLEPQTLRLRGSGGLELAADLFGPEDGPLVIFLHGGGQTRHSWKRTGAALAAGG CCCCEEECCCEEEEECCCCCEEHHHHCCCCCCCEEEEEECCCCCHHHHHHHCHHHCCCC LRVVTLDARGHGDSQWAPDRDYSRAVMVADLLAVLDQLGATPERGAVVVGASMGGITGLL EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHE ATAQPGGAAIRALVLVDIVTRPQPEGVERVMTFLGKHRDGFDTVEQAADAVAAYLPHRPR ECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC PKNHDGLLRNLRHRDGRWYWHWDPDMIDGRTADADTDSMAALLEPAARALTIPVLLVRGR CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MSDVVSEEAVAEFLEQVPHAQVVEIGNAAHTAASDDNDAFTDAVAEFVLAAAR HHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA