Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54026166

Identifier: 54026166

GI number: 54026166

Start: 4345124

End: 4346818

Strand: Reverse

Name: 54026166

Synonym: nfa41950

Alternate gene names: NA

Gene position: 4346818-4345124 (Counterclockwise)

Preceding gene: 54026169

Following gene: 54026165

Centisome position: 72.19

GC content: 76.46

Gene sequence:

>1695_bases
GTGCGAGGGAGTGAGGTGACAGTGCCCGGGGAGCGGGAAACGATCGACAGCGCTGCGCTGATGCTCTGGGGGCGGCTCTG
CCTCGAGGGGCTGGCCGAGCGCCGCGAGGAGATCAACTCGCTCAACGTGTTCCCCATCCCCGACGCGGACACCGGCACCA
ACCTGCTGGCCACCATGCGGGCCGCGGTCGCGGCGGCCGAAGACCGGGTCGGCGCGTCCGACGGCACCGCGCACGAGGTC
GCGACCGCCATGGCGCGCGGCGCGACCGCGGGCGCGCGCGGCAATTCCGGAATCATCCTGTCGCAGCTGCTGCGCGGCAT
CGCCGAGGCGAGCGAACCCGGCCCGCTGACGGCGGCGACCCTGCCGCGGGCCTTGCGGCGGGCGGCCGAACTCGTGCGGG
CCGCGCTGAGCGCACCGGTGGAGGGCACCATCCTCACCGTGCTCGAGTGCGCGGCCGACAGCGCGTCGGCCTGCCGCGAG
CCGTCGTTGGCCGAGGTCGCCGTGGCCGCGGCCGACGGTGCCGCCAAGGCGCTCGGCGACACCCCCTCGCAGCTGCCGGT
GCTGCGCGCGAACGGCGTCGTCGACGCGGGCGCGCGCGGACTGGTGGTGCTGCTCGACGCGCTGGTCGCGGTGACCCGCG
GGCACCGTCCGGCCCGGCCGGAGTACCGGCGGCCCGCGGCTGTCCCCGGCGCGCGGCCCGCCGCTCCCGGCCACGCGGTG
GCGCGGACACCGGCCGCGTCCGCGTCCGCGTCGGAGGGCCCGCCGACGCCGGGGTTCGAGGTGATGTACCTCGTCTCCGA
CTCCGACGACGCGCGGATCGAGCGACTCCGCGGCGCCTTGACCGTGCTGGGCGACTCGGTGGTGGTGGTGGGCGACGGCG
CGGGCACCTGGTCGGTGCACGTGCACTGCGCGGATGCCGGGGCGGCGGTGGAGGCCGGCCTGGCCGCGGGGACGCCGCGC
GGCATCAGGATCGAGAGCTTCGATATCGACGGCGTCGGCCCGGACGGCGGGCACGCCGACGACGAGCCCGAGGACGGTCC
GGCCGACCGCGGGGTGCTCGCGGTGGCGACCGGCGCCGACGCGGCGGCGCTGTTCGAGGCGGCGGGCGCGGTGGTGCTCG
ACGACCATCCGGTCACCTCGGCCGGTCTGCTCTCGGCGATCCGGCAGATGCCGCACCGCGAGGTGCTGGTGCTGCCCAAC
GGCGCGCTCCCCGCGCACGAGCTGGTGGCCGTCGGTGTGGCCGCGCGTGGCGAGCATCGCGACGTACTGCTGCTGCCGAG
CGGGTCGATGGTGCAGGGACTGGCCGCGCTGGCGGTCCACGACCGCGCCCGCATCGCCGTCGACGACGCCTTCGCCATGT
CCGAGGCCGCCGCCGCCACCCGCTGGGGTTCGCTGCGCCGCGCCGAGCAGCGCGCGCTCACCATGGTCGGCACGTGCGCC
CCGGGCGACGGTCTCGGCCTGGTGGGGCACGACGTCGTCGTCATCGACCGGGACGTGCCCGGTGCCGGGCGCACGCTGCT
GGACCGGATGCTCGGTCTCGGCGGCGAGCTCGTGACGCTGCTGCTGGGCGCCGACGCCGATCCCGGGCTGGCCGAGGAGC
TGTGCGCGCACATCGAGGCGGGATTCCCCGGCGTCGAGGTGGTGGTGTACCCGGGCGGACAGCGGGGGGATCTGGTGCAG
ATCGGGGTGGAATGA

Upstream 100 bases:

>100_bases
AGCCGCCGACGCCGAGGTCACGCGCCCCGGCGGCGGTCGTCGCCGCTGTGCGGCCGGTGTCGGCGCGGGCCGCTAACCTG
GCGGGCGGCGGTGGACAGCG

Downstream 100 bases:

>100_bases
ACGGTGTGGAATGAGGGCTGACACATGGCGACACTGAGCGACCGGCTCGACCACATCCTCGGCGCGAAGGCGGCCGACTC
GCTGGCCGACGCCTTCGACA

Product: putative dihydroxyacetone kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MRGSEVTVPGERETIDSAALMLWGRLCLEGLAERREEINSLNVFPIPDADTGTNLLATMRAAVAAAEDRVGASDGTAHEV
ATAMARGATAGARGNSGIILSQLLRGIAEASEPGPLTAATLPRALRRAAELVRAALSAPVEGTILTVLECAADSASACRE
PSLAEVAVAAADGAAKALGDTPSQLPVLRANGVVDAGARGLVVLLDALVAVTRGHRPARPEYRRPAAVPGARPAAPGHAV
ARTPAASASASEGPPTPGFEVMYLVSDSDDARIERLRGALTVLGDSVVVVGDGAGTWSVHVHCADAGAAVEAGLAAGTPR
GIRIESFDIDGVGPDGGHADDEPEDGPADRGVLAVATGADAAALFEAAGAVVLDDHPVTSAGLLSAIRQMPHREVLVLPN
GALPAHELVAVGVAARGEHRDVLLLPSGSMVQGLAALAVHDRARIAVDDAFAMSEAAAATRWGSLRRAEQRALTMVGTCA
PGDGLGLVGHDVVVIDRDVPGAGRTLLDRMLGLGGELVTLLLGADADPGLAEELCAHIEAGFPGVEVVVYPGGQRGDLVQ
IGVE

Sequences:

>Translated_564_residues
MRGSEVTVPGERETIDSAALMLWGRLCLEGLAERREEINSLNVFPIPDADTGTNLLATMRAAVAAAEDRVGASDGTAHEV
ATAMARGATAGARGNSGIILSQLLRGIAEASEPGPLTAATLPRALRRAAELVRAALSAPVEGTILTVLECAADSASACRE
PSLAEVAVAAADGAAKALGDTPSQLPVLRANGVVDAGARGLVVLLDALVAVTRGHRPARPEYRRPAAVPGARPAAPGHAV
ARTPAASASASEGPPTPGFEVMYLVSDSDDARIERLRGALTVLGDSVVVVGDGAGTWSVHVHCADAGAAVEAGLAAGTPR
GIRIESFDIDGVGPDGGHADDEPEDGPADRGVLAVATGADAAALFEAAGAVVLDDHPVTSAGLLSAIRQMPHREVLVLPN
GALPAHELVAVGVAARGEHRDVLLLPSGSMVQGLAALAVHDRARIAVDDAFAMSEAAAATRWGSLRRAEQRALTMVGTCA
PGDGLGLVGHDVVVIDRDVPGAGRTLLDRMLGLGGELVTLLLGADADPGLAEELCAHIEAGFPGVEVVVYPGGQRGDLVQ
IGVE
>Mature_564_residues
MRGSEVTVPGERETIDSAALMLWGRLCLEGLAERREEINSLNVFPIPDADTGTNLLATMRAAVAAAEDRVGASDGTAHEV
ATAMARGATAGARGNSGIILSQLLRGIAEASEPGPLTAATLPRALRRAAELVRAALSAPVEGTILTVLECAADSASACRE
PSLAEVAVAAADGAAKALGDTPSQLPVLRANGVVDAGARGLVVLLDALVAVTRGHRPARPEYRRPAAVPGARPAAPGHAV
ARTPAASASASEGPPTPGFEVMYLVSDSDDARIERLRGALTVLGDSVVVVGDGAGTWSVHVHCADAGAAVEAGLAAGTPR
GIRIESFDIDGVGPDGGHADDEPEDGPADRGVLAVATGADAAALFEAAGAVVLDDHPVTSAGLLSAIRQMPHREVLVLPN
GALPAHELVAVGVAARGEHRDVLLLPSGSMVQGLAALAVHDRARIAVDDAFAMSEAAAATRWGSLRRAEQRALTMVGTCA
PGDGLGLVGHDVVVIDRDVPGAGRTLLDRMLGLGGELVTLLLGADADPGLAEELCAHIEAGFPGVEVVVYPGGQRGDLVQ
IGVE

Specific function: Unknown

COG id: COG1461

COG function: function code R; Predicted kinase related to dihydroxyacetone kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DhaL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004007
- InterPro:   IPR019986 [H]

Pfam domain/function: PF02734 Dak2 [H]

EC number: NA

Molecular weight: Translated: 57040; Mature: 57040

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSEVTVPGERETIDSAALMLWGRLCLEGLAERREEINSLNVFPIPDADTGTNLLATMR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
AAVAAAEDRVGASDGTAHEVATAMARGATAGARGNSGIILSQLLRGIAEASEPGPLTAAT
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
LPRALRRAAELVRAALSAPVEGTILTVLECAADSASACREPSLAEVAVAAADGAAKALGD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCCHHHEEEECCCCHHHHHCC
TPSQLPVLRANGVVDAGARGLVVLLDALVAVTRGHRPARPEYRRPAAVPGARPAAPGHAV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
ARTPAASASASEGPPTPGFEVMYLVSDSDDARIERLRGALTVLGDSVVVVGDGAGTWSVH
ECCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECCCCEEEEE
VHCADAGAAVEAGLAAGTPRGIRIESFDIDGVGPDGGHADDEPEDGPADRGVLAVATGAD
EEECCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
AAALFEAAGAVVLDDHPVTSAGLLSAIRQMPHREVLVLPNGALPAHELVAVGVAARGEHR
HHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
DVLLLPSGSMVQGLAALAVHDRARIAVDDAFAMSEAAAATRWGSLRRAEQRALTMVGTCA
CEEEECCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
PGDGLGLVGHDVVVIDRDVPGAGRTLLDRMLGLGGELVTLLLGADADPGLAEELCAHIEA
CCCCCEECCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHEECCCCCCCHHHHHHHHHHC
GFPGVEVVVYPGGQRGDLVQIGVE
CCCCEEEEEECCCCCCCEEEECCC
>Mature Secondary Structure
MRGSEVTVPGERETIDSAALMLWGRLCLEGLAERREEINSLNVFPIPDADTGTNLLATMR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
AAVAAAEDRVGASDGTAHEVATAMARGATAGARGNSGIILSQLLRGIAEASEPGPLTAAT
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
LPRALRRAAELVRAALSAPVEGTILTVLECAADSASACREPSLAEVAVAAADGAAKALGD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCCHHHEEEECCCCHHHHHCC
TPSQLPVLRANGVVDAGARGLVVLLDALVAVTRGHRPARPEYRRPAAVPGARPAAPGHAV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
ARTPAASASASEGPPTPGFEVMYLVSDSDDARIERLRGALTVLGDSVVVVGDGAGTWSVH
ECCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECCCCEEEEE
VHCADAGAAVEAGLAAGTPRGIRIESFDIDGVGPDGGHADDEPEDGPADRGVLAVATGAD
EEECCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
AAALFEAAGAVVLDDHPVTSAGLLSAIRQMPHREVLVLPNGALPAHELVAVGVAARGEHR
HHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
DVLLLPSGSMVQGLAALAVHDRARIAVDDAFAMSEAAAATRWGSLRRAEQRALTMVGTCA
CEEEECCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
PGDGLGLVGHDVVVIDRDVPGAGRTLLDRMLGLGGELVTLLLGADADPGLAEELCAHIEA
CCCCCEECCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHEECCCCCCCHHHHHHHHHHC
GFPGVEVVVYPGGQRGDLVQIGVE
CCCCEEEEEECCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA