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The map label for this gene is yhgF [H]

Identifier: 54026120

GI number: 54026120

Start: 4294525

End: 4296876

Strand: Reverse

Name: yhgF [H]

Synonym: nfa41490

Alternate gene names: 54026120

Gene position: 4296876-4294525 (Counterclockwise)

Preceding gene: 54026121

Following gene: 54026119

Centisome position: 71.36

GC content: 71.51

Gene sequence:

>2352_bases
GTGGGCACGCTCGCGGGTCCGGCGGGCGTCGGCAGCCGCATCGCCGAGGAACTCGGGGTGCGGGAGAGCCAGGTCCGCGC
CGCGGTCGAACTGCTCGACGCGGGCTCGACCGTGCCCTTCATCGCCCGGTACCGCAAGGAGGTGACCGGCGGCCTCGACG
ACGCGCAGCTGCGCACGCTGGAGGAACGCCTGCACTACCTGCGCGAGCTGGACGAGCGCCGCGCCGCCATCATCGAATCC
ATCCGCGCCCAGGGCAAACTCGACGACGAGCTGCACCGCAGCCTGCTGCTGGCCGAGACCAAGGCCCGCCTCGAGGACAT
CTACCTGCCCTACAAGCCCAAGCGGCGCACCAAGGCCCAGATCGCGCGCGAGGCCGGGCACGAGCCGGTGGCCGACGCCC
TGCTGGCCGACCCCACCACCGATCCCGCGCAGTACACCGCCGAGCAGCTCGACGGCGCCCGCGCGATCCTGGTCGAGCGG
TTCGCCGAAGACGCCGACCTGGTCGGTGAGTTGCGCGAGATGATGTGGAATCGCGGGCAGCTCACCTCCACCGTGCGGCC
CGGCAAGGAGGAGGCGGGGGCGAAGTTCGCCGACTACTTCGAGTTCAGCGAGGCGTTCAGCTCGCTGCCCTCACACCGGG
TGCTCGCGCTGTTCCGCGGGGAGAAGGAGGAGGTGCTCAGCCTCCAGCTCGAGCCCGACACCGAGGAACTCGCGCCGGGG
GAACGCAGCGTCTACGAGGGCCGCATCGCCGCGAAGTTCGGCATCGCCGATCGCGGACGCCCCGCCGACAGCTGGCTGCT
CGACACCGTGCGGTGGGCGTGGCGGACCAAGTTGCAGGTGAGCCTGGGCATCGACACCAGGATGCGGCTGCGGCAGGCGG
CGGAGAAGGACGCCGTCGACGTCTTCGCGGCGAACCTGCGCGATCTGCTGCTGGCCGCCCCCGCGGGCACCCGCACCACG
ATGGGCCTTGACCCCGGCTACCGCACCGGTGTCAAGGTGGCCGTCGTCGACGCGACCGGCAAGGTGGTCGCGACCGAGGT
GATCTACCCGCACAAGCCGCAGGGCCAGACCGAGAAGTCGCTGGCCGTGCTCGGCGCGCTGGTGGCCCGCTTCGGTGTCG
AACTGATCGCGATCGGCAACGGGACGGCTTCGCGCGAGACCGACGCGCTGGTGGCCGAGCTCATCTCCCGCATCGGTGCC
ACGTCGGACAAGAAGCCGACCAAGGTGGTCGTCTCCGAGGCCGGCGCCTCGGTGTACTCCGCCTCCGCCTACGCCTCCCA
GGAACTGCCGGAACTGGACGTCTCGCTGCGCGGCGCGGTCTCGATCGCACGTCGGTTGCAGGACCCGCTGGCCGAGCTGG
TGAAGATCGACCCCAAGTCGATCGGCGTGGGCCAGTATCAGCACGACGTCTCCGAGACGCTGCTGGCCCGCTCGCTGGGC
GCGGTGGTCGAGGACGCGGTCAACGCGGTCGGCGTCGACGTCAACACCGCGTCGGTGCCGCTGCTGTCGCGGGTGTCGGG
CATCGGCTCGGCCGTCGCGGAGAGCATCGTCGCCCATCGGGACCAGAACGGGCCGTTCCGTTCCCGTACCGCCCTGCTCG
ACGTGCCCCGGCTCGGGCCGAAGGCATTCGAACAGTGCGCGGGCTTCCTGCGCATCCGCGGCGGCGACGATCCGCTGGAC
ACCTCGGCGGTGCACCCGGAGGCCTACCCGGTGGTGCGGCGCATTCTCGAGGCCACCGGCCGCCGCGTCGACGAGCTGAT
CGGCAACACCGGCGTGCTCCGGTCGTTGCGGCCCGCCGAGTTCACCGACGAGAAGTTCGGCGTGCCCACCGTCACCGACA
TCATCGGCGAACTGGAGAAACCCGGCCGCGACCCGCGCCCGGAGTTCAAGACCGCCGAATTCGCCGCCGGGGTGGAGAAG
GTCGCCGACCTGAAGCCGGGCATGGTGCTCGAGGGCGTGGTGACCAACGTCGCGGCGTTCGGCGCGTTCGTCGACGTCGG
CGTCCACCAGGACGGGCTGGTGCACGTCTCGGCCATGTCGCACTCCTTCGTCAAGGACCCGCGCGAGGTCGTCAAGTCCG
GTGACGTGGTGAAGGTGAAGGTGCTCGAGGTCGACGTCGCCCGTCAGCGCATCGGCCTGTCGCTGCGGCTGGACGACGAG
CCGGGCGCCGCCAAGGGCGAGCGCGGCGGCCAGCGCGAGGGCGGGCGCCGCGGCGGTTCCGGTGGTGCCGGCGGCGGACA
ACGGCAGAATGGACAGGGGCGGCAGCAGAGTCGCAACCAGGGCAGGCGCAACGCCCCCGCACCCAGCGGGTCGATGGCCG
ACGCCCTGCGCCGCGCCGGATTCGGGAAGTAG

Upstream 100 bases:

>100_bases
CAGCCGCCGTCGGTGGGAGCCGCTAGTGTTGCCGCTCGTGACGACAGCGCCCGAGATCGCCAGTTCAGAGACGAACAGCA
CCGATACGACCGCCGCACCG

Downstream 100 bases:

>100_bases
CAGCCGGCCCGGCGGCGCACCGGAGAAGCGGGGAGGTACCGGCGGTCATGCGACGGTGGCTCGAACAGGACGTGATCGCG
CACGGCCGCCTGCCGCTGCT

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 782

Protein sequence:

>783_residues
MGTLAGPAGVGSRIAEELGVRESQVRAAVELLDAGSTVPFIARYRKEVTGGLDDAQLRTLEERLHYLRELDERRAAIIES
IRAQGKLDDELHRSLLLAETKARLEDIYLPYKPKRRTKAQIAREAGHEPVADALLADPTTDPAQYTAEQLDGARAILVER
FAEDADLVGELREMMWNRGQLTSTVRPGKEEAGAKFADYFEFSEAFSSLPSHRVLALFRGEKEEVLSLQLEPDTEELAPG
ERSVYEGRIAAKFGIADRGRPADSWLLDTVRWAWRTKLQVSLGIDTRMRLRQAAEKDAVDVFAANLRDLLLAAPAGTRTT
MGLDPGYRTGVKVAVVDATGKVVATEVIYPHKPQGQTEKSLAVLGALVARFGVELIAIGNGTASRETDALVAELISRIGA
TSDKKPTKVVVSEAGASVYSASAYASQELPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSETLLARSLG
AVVEDAVNAVGVDVNTASVPLLSRVSGIGSAVAESIVAHRDQNGPFRSRTALLDVPRLGPKAFEQCAGFLRIRGGDDPLD
TSAVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLRPAEFTDEKFGVPTVTDIIGELEKPGRDPRPEFKTAEFAAGVEK
VADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVARQRIGLSLRLDDE
PGAAKGERGGQREGGRRGGSGGAGGGQRQNGQGRQQSRNQGRRNAPAPSGSMADALRRAGFGK

Sequences:

>Translated_783_residues
MGTLAGPAGVGSRIAEELGVRESQVRAAVELLDAGSTVPFIARYRKEVTGGLDDAQLRTLEERLHYLRELDERRAAIIES
IRAQGKLDDELHRSLLLAETKARLEDIYLPYKPKRRTKAQIAREAGHEPVADALLADPTTDPAQYTAEQLDGARAILVER
FAEDADLVGELREMMWNRGQLTSTVRPGKEEAGAKFADYFEFSEAFSSLPSHRVLALFRGEKEEVLSLQLEPDTEELAPG
ERSVYEGRIAAKFGIADRGRPADSWLLDTVRWAWRTKLQVSLGIDTRMRLRQAAEKDAVDVFAANLRDLLLAAPAGTRTT
MGLDPGYRTGVKVAVVDATGKVVATEVIYPHKPQGQTEKSLAVLGALVARFGVELIAIGNGTASRETDALVAELISRIGA
TSDKKPTKVVVSEAGASVYSASAYASQELPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSETLLARSLG
AVVEDAVNAVGVDVNTASVPLLSRVSGIGSAVAESIVAHRDQNGPFRSRTALLDVPRLGPKAFEQCAGFLRIRGGDDPLD
TSAVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLRPAEFTDEKFGVPTVTDIIGELEKPGRDPRPEFKTAEFAAGVEK
VADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVARQRIGLSLRLDDE
PGAAKGERGGQREGGRRGGSGGAGGGQRQNGQGRQQSRNQGRRNAPAPSGSMADALRRAGFGK
>Mature_782_residues
GTLAGPAGVGSRIAEELGVRESQVRAAVELLDAGSTVPFIARYRKEVTGGLDDAQLRTLEERLHYLRELDERRAAIIESI
RAQGKLDDELHRSLLLAETKARLEDIYLPYKPKRRTKAQIAREAGHEPVADALLADPTTDPAQYTAEQLDGARAILVERF
AEDADLVGELREMMWNRGQLTSTVRPGKEEAGAKFADYFEFSEAFSSLPSHRVLALFRGEKEEVLSLQLEPDTEELAPGE
RSVYEGRIAAKFGIADRGRPADSWLLDTVRWAWRTKLQVSLGIDTRMRLRQAAEKDAVDVFAANLRDLLLAAPAGTRTTM
GLDPGYRTGVKVAVVDATGKVVATEVIYPHKPQGQTEKSLAVLGALVARFGVELIAIGNGTASRETDALVAELISRIGAT
SDKKPTKVVVSEAGASVYSASAYASQELPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSETLLARSLGA
VVEDAVNAVGVDVNTASVPLLSRVSGIGSAVAESIVAHRDQNGPFRSRTALLDVPRLGPKAFEQCAGFLRIRGGDDPLDT
SAVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLRPAEFTDEKFGVPTVTDIIGELEKPGRDPRPEFKTAEFAAGVEKV
ADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVARQRIGLSLRLDDEP
GAAKGERGGQREGGRRGGSGGAGGGQRQNGQGRQQSRNQGRRNAPAPSGSMADALRRAGFGK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=779, Percent_Identity=33.6328626444159, Blast_Score=388, Evalue=1e-108,
Organism=Homo sapiens, GI27597090, Length=402, Percent_Identity=25.6218905472637, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI87082262, Length=733, Percent_Identity=61.93724420191, Blast_Score=883, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=87, Percent_Identity=42.5287356321839, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=715, Percent_Identity=29.0909090909091, Blast_Score=220, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17552892, Length=313, Percent_Identity=28.4345047923323, Blast_Score=77, Evalue=5e-14,
Organism=Drosophila melanogaster, GI62484314, Length=775, Percent_Identity=31.0967741935484, Blast_Score=357, Evalue=1e-98,
Organism=Drosophila melanogaster, GI24640080, Length=511, Percent_Identity=21.1350293542074, Blast_Score=80, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84132; Mature: 84001

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTLAGPAGVGSRIAEELGVRESQVRAAVELLDAGSTVPFIARYRKEVTGGLDDAQLRTL
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH
EERLHYLRELDERRAAIIESIRAQGKLDDELHRSLLLAETKARLEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IAREAGHEPVADALLADPTTDPAQYTAEQLDGARAILVERFAEDADLVGELREMMWNRGQ
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTSTVRPGKEEAGAKFADYFEFSEAFSSLPSHRVLALFRGEKEEVLSLQLEPDTEELAPG
CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCEEEEEECCCHHHHCCC
ERSVYEGRIAAKFGIADRGRPADSWLLDTVRWAWRTKLQVSLGIDTRMRLRQAAEKDAVD
CHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHH
VFAANLRDLLLAAPAGTRTTMGLDPGYRTGVKVAVVDATGKVVATEVIYPHKPQGQTEKS
HHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHH
LAVLGALVARFGVELIAIGNGTASRETDALVAELISRIGATSDKKPTKVVVSEAGASVYS
HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH
ASAYASQELPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSETLLARSLG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVEDAVNAVGVDVNTASVPLLSRVSGIGSAVAESIVAHRDQNGPFRSRTALLDVPRLGP
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCH
KAFEQCAGFLRIRGGDDPLDTSAVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLRPAE
HHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
FTDEKFGVPTVTDIIGELEKPGRDPRPEFKTAEFAAGVEKVADLKPGMVLEGVVTNVAAF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVARQRIGLSLRLDDE
HHHHCCCCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEHHHHHHHHCCEEEECCC
PGAAKGERGGQREGGRRGGSGGAGGGQRQNGQGRQQSRNQGRRNAPAPSGSMADALRRAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCC
FGK
CCC
>Mature Secondary Structure 
GTLAGPAGVGSRIAEELGVRESQVRAAVELLDAGSTVPFIARYRKEVTGGLDDAQLRTL
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH
EERLHYLRELDERRAAIIESIRAQGKLDDELHRSLLLAETKARLEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IAREAGHEPVADALLADPTTDPAQYTAEQLDGARAILVERFAEDADLVGELREMMWNRGQ
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTSTVRPGKEEAGAKFADYFEFSEAFSSLPSHRVLALFRGEKEEVLSLQLEPDTEELAPG
CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCEEEEEECCCHHHHCCC
ERSVYEGRIAAKFGIADRGRPADSWLLDTVRWAWRTKLQVSLGIDTRMRLRQAAEKDAVD
CHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHH
VFAANLRDLLLAAPAGTRTTMGLDPGYRTGVKVAVVDATGKVVATEVIYPHKPQGQTEKS
HHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHH
LAVLGALVARFGVELIAIGNGTASRETDALVAELISRIGATSDKKPTKVVVSEAGASVYS
HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH
ASAYASQELPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSETLLARSLG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVEDAVNAVGVDVNTASVPLLSRVSGIGSAVAESIVAHRDQNGPFRSRTALLDVPRLGP
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCH
KAFEQCAGFLRIRGGDDPLDTSAVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLRPAE
HHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
FTDEKFGVPTVTDIIGELEKPGRDPRPEFKTAEFAAGVEKVADLKPGMVLEGVVTNVAAF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVARQRIGLSLRLDDE
HHHHCCCCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEHHHHHHHHCCEEEECCC
PGAAKGERGGQREGGRRGGSGGAGGGQRQNGQGRQQSRNQGRRNAPAPSGSMADALRRAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCC
FGK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]