Click here to switch to the map view.

The map label for this gene is yifB [C]

Identifier: 54026054

GI number: 54026054

Start: 4233874

End: 4235787

Strand: Reverse

Name: yifB [C]

Synonym: nfa40830

Alternate gene names: 54026054

Gene position: 4235787-4233874 (Counterclockwise)

Preceding gene: 54026055

Following gene: 54026053

Centisome position: 70.35

GC content: 76.49

Gene sequence:

>1914_bases
GTGACGGAGGAGGCGGGGTTTCCGTTCTCGGCCGTGGTCGGGCAGGAGCGGCTGCAGTTGGCGCTGATCCTGTGTGCGGT
GCATCCGGGGATCGGCGGGGTGTTGGTGCGCGGCGAGAAGGGCACCGCGAAGTCGACGGTGGTGCGGGCGCTGGCGCAGC
TGTTGCCGCCGGTGGTGGACGAGACCGGGGCGCGGCCCGCGCGACTGGTGGAGCTGCCGGTCGGCGCGACCGAGGACCGG
GTGGTCGGCTCACTGGATCTGGAACGGGTGCTGCGCGACGGCGAACAGGCGTTCCGGCCCGGGCTGTTGGCCGCCGCCCA
CCACGGCGTGCTCTACGTCGACGAGGTCAATCTGCTGCACGACCACCTGGTGGACGTGCTGCTCGACGCGGCCGCGATGG
GCCGGGTGCACGTCGAACGCGACGGCGTCTCGCATTCGCATCCGGCGCGCTTCGTGCTGGTCGGCACCATGAACCCGGAG
GAGGGCGAGCTGCGTCCGCAGCTGCTGGACCGTTTCGGCCTCACCGTCGACGTGGCCGCCTCCCGTGACGTGGACGTCCG
CATGACCGTGGTGCGGCGCAGGCTCGACTACGAGGCCGACCCGGCCGGGTTCGCCGCGCGCTACGCCGCCGCCGACCGGG
AGATCGCCGACCGCATTCTCGCCGCTCGCGAGCGGGTCGCCTGCGTCGAACTCGACGACACCGAATTGCGCCGGATCGCC
GCCCTGTGCGCGGCTTTCGACGTCGACGGCATGCGCGCGGACCTGGTGGTCGCGCGCACGGCCACCGCGCACGCCGCGTG
GCGTGGGGCCGACGCGGTCGAGGCCGAGGACGTGCGGGTGGCGGCGGAACTGGCGCTGCCGCATCGCCGTCGCCGTGACC
CCTTCGACGAGCCGGGCATCAGCGAGGACCAACTCGACCAGGCCATGCGCGACGCGGCCGAGCAGGCCGAACCGCCTGCC
ACGGACGAGCCGGACCAGCCGCCGCGCTCCGCGGACCGCGGCGAGGATCCCGGCGACGGCCCCGACGACCCCGGCACACC
GCCCGAGGGCGGGCCGGGTGGCGGGCAGGCCCCCGAAGGGCGGACCGGCACCCCGGCGCCCGGCGCCGCGAAACCGCCGC
GCTGGGAGGTGCCCGGCGTCGGCGAGGGCGCCCCCGGCCGCCGTTCCCGCGCCCAGACCCGCACCGGCCGGGTGGTCCGC
TCCACCACCGAGCCGGGCACCGGCCTGCACCTGCTCGGCACCGTCTTCGCCGCGGCGCCGCACCAGCGCACGCGCGGCCG
CCTCGCCGGGCCGCTCGCGCTCGCCCCGGAAGATCTGCGCGGCGCGTATCGCGAAGGCCGCGAAGGCAATCTGGTCGTGT
TCGTGGTCGATGCCTCCGGCTCGATGGCCGCCAGGGACCGGCTGTCGGCGGTGACCGGCGCGATCGTCACCTTGCTGCGC
GACGCCTATCAGCGCCGCGACAAGGTGGCGGTGGTGAGCGTGCGCGGCGCGACCGCGGACCTGGTGCTGCCGCCGACCTC
CTCGGTGGACATCGCGGTCCGCAGGCTCGCGGGCCTGCGCACCGGCGGCAAGACCCCGCTGGCGGCGGGTCTGCTGCGGG
CGCGCGAGATCGTCGCCCGCGAGCGCGTCCGCGACCCGCGCAGGCGGCCGATGCTGGTGTTGCTCACCGACGGCCGCGCC
ACCGGCGGCGCCGATCCGGTGGGCCGGGCGAAGACGGCGGCGGGGCTGCTGGCCCGCGACGGCGTCACCGCGATGGTGGT
CGACTGCGAGCGCGGCATGGTCCGCCTCGGGCTGGCCGCCGACCTGGCGCGGGCGCTGGGCGGCACGCTGGTGCGGCTCG
GCGAGCTGACCGGAGCGGCGGTCGCCGACGTCGTGCGCGCGGCCGACCCCGCCCGATCGCCGCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
GAGCGGCGGCGGGGTGGTGGTCCGGGGGTGGTGGGGGCGTGCTTAGGGTGGGGGTGTGTCGTTGTCCCACGCTGAAAGAG
CGCATGCCGGTGGTTCGTCG

Downstream 100 bases:

>100_bases
GCGTGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACGGAGGCCGCCCCGCTCAGGCAGAATCAGACACCGCCTGAGC
GTGTCAGCGGCCGGAGGCGG

Product: putative magnesium chelatase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 636

Protein sequence:

>637_residues
MTEEAGFPFSAVVGQERLQLALILCAVHPGIGGVLVRGEKGTAKSTVVRALAQLLPPVVDETGARPARLVELPVGATEDR
VVGSLDLERVLRDGEQAFRPGLLAAAHHGVLYVDEVNLLHDHLVDVLLDAAAMGRVHVERDGVSHSHPARFVLVGTMNPE
EGELRPQLLDRFGLTVDVAASRDVDVRMTVVRRRLDYEADPAGFAARYAAADREIADRILAARERVACVELDDTELRRIA
ALCAAFDVDGMRADLVVARTATAHAAWRGADAVEAEDVRVAAELALPHRRRRDPFDEPGISEDQLDQAMRDAAEQAEPPA
TDEPDQPPRSADRGEDPGDGPDDPGTPPEGGPGGGQAPEGRTGTPAPGAAKPPRWEVPGVGEGAPGRRSRAQTRTGRVVR
STTEPGTGLHLLGTVFAAAPHQRTRGRLAGPLALAPEDLRGAYREGREGNLVVFVVDASGSMAARDRLSAVTGAIVTLLR
DAYQRRDKVAVVSVRGATADLVLPPTSSVDIAVRRLAGLRTGGKTPLAAGLLRAREIVARERVRDPRRRPMLVLLTDGRA
TGGADPVGRAKTAAGLLARDGVTAMVVDCERGMVRLGLAADLARALGGTLVRLGELTGAAVADVVRAADPARSPRAA

Sequences:

>Translated_637_residues
MTEEAGFPFSAVVGQERLQLALILCAVHPGIGGVLVRGEKGTAKSTVVRALAQLLPPVVDETGARPARLVELPVGATEDR
VVGSLDLERVLRDGEQAFRPGLLAAAHHGVLYVDEVNLLHDHLVDVLLDAAAMGRVHVERDGVSHSHPARFVLVGTMNPE
EGELRPQLLDRFGLTVDVAASRDVDVRMTVVRRRLDYEADPAGFAARYAAADREIADRILAARERVACVELDDTELRRIA
ALCAAFDVDGMRADLVVARTATAHAAWRGADAVEAEDVRVAAELALPHRRRRDPFDEPGISEDQLDQAMRDAAEQAEPPA
TDEPDQPPRSADRGEDPGDGPDDPGTPPEGGPGGGQAPEGRTGTPAPGAAKPPRWEVPGVGEGAPGRRSRAQTRTGRVVR
STTEPGTGLHLLGTVFAAAPHQRTRGRLAGPLALAPEDLRGAYREGREGNLVVFVVDASGSMAARDRLSAVTGAIVTLLR
DAYQRRDKVAVVSVRGATADLVLPPTSSVDIAVRRLAGLRTGGKTPLAAGLLRAREIVARERVRDPRRRPMLVLLTDGRA
TGGADPVGRAKTAAGLLARDGVTAMVVDCERGMVRLGLAADLARALGGTLVRLGELTGAAVADVVRAADPARSPRAA
>Mature_636_residues
TEEAGFPFSAVVGQERLQLALILCAVHPGIGGVLVRGEKGTAKSTVVRALAQLLPPVVDETGARPARLVELPVGATEDRV
VGSLDLERVLRDGEQAFRPGLLAAAHHGVLYVDEVNLLHDHLVDVLLDAAAMGRVHVERDGVSHSHPARFVLVGTMNPEE
GELRPQLLDRFGLTVDVAASRDVDVRMTVVRRRLDYEADPAGFAARYAAADREIADRILAARERVACVELDDTELRRIAA
LCAAFDVDGMRADLVVARTATAHAAWRGADAVEAEDVRVAAELALPHRRRRDPFDEPGISEDQLDQAMRDAAEQAEPPAT
DEPDQPPRSADRGEDPGDGPDDPGTPPEGGPGGGQAPEGRTGTPAPGAAKPPRWEVPGVGEGAPGRRSRAQTRTGRVVRS
TTEPGTGLHLLGTVFAAAPHQRTRGRLAGPLALAPEDLRGAYREGREGNLVVFVVDASGSMAARDRLSAVTGAIVTLLRD
AYQRRDKVAVVSVRGATADLVLPPTSSVDIAVRRLAGLRTGGKTPLAAGLLRAREIVARERVRDPRRRPMLVLLTDGRAT
GGADPVGRAKTAAGLLARDGVTAMVVDCERGMVRLGLAADLARALGGTLVRLGELTGAAVADVVRAADPARSPRAA

Specific function: Unknown

COG id: COG1239

COG function: function code H; Mg-chelatase subunit ChlI

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011704
- InterPro:   IPR012804
- InterPro:   IPR002035 [H]

Pfam domain/function: PF07728 AAA_5; PF00092 VWA [H]

EC number: NA

Molecular weight: Translated: 67222; Mature: 67091

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEEAGFPFSAVVGQERLQLALILCAVHPGIGGVLVRGEKGTAKSTVVRALAQLLPPVVD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHH
ETGARPARLVELPVGATEDRVVGSLDLERVLRDGEQAFRPGLLAAAHHGVLYVDEVNLLH
HCCCCCEEEEEECCCCCCCCEECHHHHHHHHHCCHHHHCCCHHHHHCCCEEEEECHHHHH
DHLVDVLLDAAAMGRVHVERDGVSHSHPARFVLVGTMNPEEGELRPQLLDRFGLTVDVAA
HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCEEEEEC
SRDVDVRMTVVRRRLDYEADPAGFAARYAAADREIADRILAARERVACVELDDTELRRIA
CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHH
ALCAAFDVDGMRADLVVARTATAHAAWRGADAVEAEDVRVAAELALPHRRRRDPFDEPGI
HHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCC
SEDQLDQAMRDAAEQAEPPATDEPDQPPRSADRGEDPGDGPDDPGTPPEGGPGGGQAPEG
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTGTPAPGAAKPPRWEVPGVGEGAPGRRSRAQTRTGRVVRSTTEPGTGLHLLGTVFAAAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCC
HQRTRGRLAGPLALAPEDLRGAYREGREGNLVVFVVDASGSMAARDRLSAVTGAIVTLLR
CHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
DAYQRRDKVAVVSVRGATADLVLPPTSSVDIAVRRLAGLRTGGKTPLAAGLLRAREIVAR
HHHHHCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ERVRDPRRRPMLVLLTDGRATGGADPVGRAKTAAGLLARDGVTAMVVDCERGMVRLGLAA
HHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHH
DLARALGGTLVRLGELTGAAVADVVRAADPARSPRAA
HHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TEEAGFPFSAVVGQERLQLALILCAVHPGIGGVLVRGEKGTAKSTVVRALAQLLPPVVD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHH
ETGARPARLVELPVGATEDRVVGSLDLERVLRDGEQAFRPGLLAAAHHGVLYVDEVNLLH
HCCCCCEEEEEECCCCCCCCEECHHHHHHHHHCCHHHHCCCHHHHHCCCEEEEECHHHHH
DHLVDVLLDAAAMGRVHVERDGVSHSHPARFVLVGTMNPEEGELRPQLLDRFGLTVDVAA
HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCEEEEEC
SRDVDVRMTVVRRRLDYEADPAGFAARYAAADREIADRILAARERVACVELDDTELRRIA
CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHH
ALCAAFDVDGMRADLVVARTATAHAAWRGADAVEAEDVRVAAELALPHRRRRDPFDEPGI
HHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCC
SEDQLDQAMRDAAEQAEPPATDEPDQPPRSADRGEDPGDGPDDPGTPPEGGPGGGQAPEG
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTGTPAPGAAKPPRWEVPGVGEGAPGRRSRAQTRTGRVVRSTTEPGTGLHLLGTVFAAAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCC
HQRTRGRLAGPLALAPEDLRGAYREGREGNLVVFVVDASGSMAARDRLSAVTGAIVTLLR
CHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
DAYQRRDKVAVVSVRGATADLVLPPTSSVDIAVRRLAGLRTGGKTPLAAGLLRAREIVAR
HHHHHCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ERVRDPRRRPMLVLLTDGRATGGADPVGRAKTAAGLLARDGVTAMVVDCERGMVRLGLAA
HHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHH
DLARALGGTLVRLGELTGAAVADVVRAADPARSPRAA
HHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]