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The map label for this gene is 54026013

Identifier: 54026013

GI number: 54026013

Start: 4192681

End: 4193370

Strand: Reverse

Name: 54026013

Synonym: nfa40430

Alternate gene names: NA

Gene position: 4193370-4192681 (Counterclockwise)

Preceding gene: 54026014

Following gene: 54026012

Centisome position: 69.64

GC content: 65.36

Gene sequence:

>690_bases
GTGACCTGGACACAGCTGCCGCTGGCGGCATTCGACCTGGAGACGACGTCCGCCGACCCGCACAGCGCGCGAGTCGTGAC
AGCCTCGATCATCCGAGTCGACGGCGGGGATGTGCGTGCCCGCAACTGGATAGCGAACCCGCACATCCCCATCCCGGCCG
AAGCGACAGAGATTCACGGCTACACCGACGAATACGTCCAAAAGCACGGTCGCCCCCACGCCGATGTGATCGCCGAGGTG
ACGGCGGAACTGCACGCGTGCTGGGCGGAAGGCCGGTGTGTCGCGGTGTACAACGGAAGCTTCGACTTCACCGTCCTGGC
TACCCACGACCCTTCCTTCGCTGTGTCAGGGCTGGTGGTCGACGCGTTCGTGCTGGACAAGAAGTACGACCGGTACCGAC
GCGGCTCCCGGAAGCTCTCCGCCGTGTGCATCCATTACGGCGTCCAAATGGACGCCGCCCACGACGCCCAAGCGGACGCC
ACCGCCGCCGCCCGGCTCGCCTGGAAACTCCCGCGCATCTACCCCGCACTCGCCGAATACACACCCACCGAACTGATGGA
AGCCCAAACCGCCTGGTACGCGCAGCAAGCCGCCAGCTTCATCGATTACCTCCGGCGAAACGACCGCCCATTCGACGACG
TCCGTACCGAATGGCCGATCGCCCGACCATCCGAAAGCAACGCAGCATGA

Upstream 100 bases:

>100_bases
AGGAACTCTCGGCCTTGCGGGAAGCGAACAGGCGGGAAGGGTTCAAAGCCGTGTACGTGCTCCCGGGCCAAACGATCCTG
GAAGCTCTCGGGCGACAGAC

Downstream 100 bases:

>100_bases
CCGTCAACCGCATCAGAACCTCTAGCCAGGTGCCAGTGCTCGGCGAGTACAAACGCAGAAAGGTGCGGCTACTCCGCGAG
GCGAAAGGGATCCCCTCCCT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: DNA Polymerase III Epsilon Subunit; Exonuclease RNAse T And DNA Polymerase III; Exonuclease; DNA Polymerase III; DNA Polymerase III Epsilon Subunit-Like 3-5' Exonuclease; DNA Exonuclease; DNA Polymerase III Subunit Epsilon-Like 3-5' Exonuclease

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNWIANPHIPIPAEATEIHGYTDEYVQKHGRPHADVIAEV
TAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVVDAFVLDKKYDRYRRGSRKLSAVCIHYGVQMDAAHDAQADA
TAAARLAWKLPRIYPALAEYTPTELMEAQTAWYAQQAASFIDYLRRNDRPFDDVRTEWPIARPSESNAA

Sequences:

>Translated_229_residues
MTWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNWIANPHIPIPAEATEIHGYTDEYVQKHGRPHADVIAEV
TAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVVDAFVLDKKYDRYRRGSRKLSAVCIHYGVQMDAAHDAQADA
TAAARLAWKLPRIYPALAEYTPTELMEAQTAWYAQQAASFIDYLRRNDRPFDDVRTEWPIARPSESNAA
>Mature_228_residues
TWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNWIANPHIPIPAEATEIHGYTDEYVQKHGRPHADVIAEVT
AELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVVDAFVLDKKYDRYRRGSRKLSAVCIHYGVQMDAAHDAQADAT
AAARLAWKLPRIYPALAEYTPTELMEAQTAWYAQQAASFIDYLRRNDRPFDDVRTEWPIARPSESNAA

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25472; Mature: 25340

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNWIANPHIPIPAEATEIHG
CCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEECEEECCCCCCCCCCHHHCCC
YTDEYVQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVV
CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCHHHHHHHH
DAFVLDKKYDRYRRGSRKLSAVCIHYGVQMDAAHDAQADATAAARLAWKLPRIYPALAEY
HHHHHHHHHHHHHCCCHHHHHEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
TPTELMEAQTAWYAQQAASFIDYLRRNDRPFDDVRTEWPIARPSESNAA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNWIANPHIPIPAEATEIHG
CCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEECEEECCCCCCCCCCHHHCCC
YTDEYVQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVV
CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCHHHHHHHH
DAFVLDKKYDRYRRGSRKLSAVCIHYGVQMDAAHDAQADATAAARLAWKLPRIYPALAEY
HHHHHHHHHHHHHCCCHHHHHEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
TPTELMEAQTAWYAQQAASFIDYLRRNDRPFDDVRTEWPIARPSESNAA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA