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The map label for this gene is 54025932

Identifier: 54025932

GI number: 54025932

Start: 4153001

End: 4154596

Strand: Reverse

Name: 54025932

Synonym: nfa39620

Alternate gene names: NA

Gene position: 4154596-4153001 (Counterclockwise)

Preceding gene: 54025933

Following gene: 54025931

Centisome position: 69.0

GC content: 67.04

Gene sequence:

>1596_bases
ATGTCCCGCTTCAACACCAAAGCCGCTCGCCCGGCGAACACCGCGGTCGGTCCGATCAAGACCAAGGCGAAGAAGACCAC
CGTCACCCACGAAGGCGCACCCGCCCACCTGCGCGACGCCCGCTCGGAACTCTTCCTCCTCGCCGTCACCAATTTCGTCG
GCCAGGACACCTTCTACGAGTCCGCCGCCGTCCGTGACGGCCGCTACCAGAAGCTCGTCCGCAAGATGGCCGTCAAGGAC
GGCGAGTGGACCGCCAACTTCCTGGCCTGGCTCCGTGGCCCCGAGGCGAACATGCGCACCGCATCCCTCGTCGGCGCCGC
CGAATACGTCAAGGCACGCCTGGAAGCGGGCCTCGCCGGCGACAACCGGCACGTCATCGCGAGCGTGCTGCAGCGCGCCG
ACGAGCCCGCCGAAATGCTCGCCTACTGGACCTCGACCTACGGTCGAAAGGTGCCGCAGCCCGTGAAGCGTGGCGTCGCC
GACGCCGCGGTCCGCCTGTACAACGAGCGATCGCTGCTGAAGTACGACACCGACAGCAAGGGCTACCGTTTCGGTGACGT
CATCGACCTCACGCACCCCATCCCGAAAAGCGCGTGGCAGTCCGACCTGTTCCGGCACGCGATCGACAGGCGACACAACC
GCGACAACGCCATCCCGGAGACACTGCAGACGGTGATCGCGAACGCGACCTTCAAGACGTACACGCCGCTCTACCTCGAC
CGCCTTGCCGAAAGCGGCGAACTCACCGACGCGCTCAGCAACGCGGGCATGACGTGGGAGCAGCTCGGGTCGTTCGGTGC
CTGGACCGCGGCCCGCTGGGAGGCCATGATCCCGTCGATGGGTTACATGGCGTTGCTGCGGAACCTGCGGAACTTCGACG
AGGCAGGGCTCTCTGACGAAGCCGCAGCAGTTGTCGCGGCACGCCTGTCCGATCCGGACGAGGTGGCTCGGTCGCGGCAG
CTGCCGTTCAGGTTCCTGTCGGCCTACGAGCAGGTGCCGTCGCTGCGGTGGGGTCATGCCCTCGACAAGGCCCTCGGCCA
CTCGTTGCGAAACCTCCCGGCCCTGCCCGGCCGCACACTGATCCTCATCGACACCTCGGCGTCGATGTCCAGCATGGGCT
ACTCGGCGCGGTCGAAGGTGACTCCGGTGAAGGCCGCTGCGGTGTTCGGTGTCGCGCTCGGTGCCCACCTCGGTGGCAAC
GCTGACATCTACGGATTCGCCTCCGGCGAGTTCAAGCACCAGCTGAGCAAGGGGGCGTCACCGATCAAGGAGATCAAGCG
GTTCGTGAAGCGGGTCGGCGAGGTCGGTCACGGCACCGACATCGCGGGCGCTGTCCGCCGCCAGTACAAGGGCCACGACC
GGGTCTTCATCATCTCCGATATGCAGACCCAGACCCGCGGCATCACCAACCCGATCCCCGGACACGTGCCCGTGTACGGG
TTCAATCTCGGTGGCTACAAGCCTGCCGCGTACCCGTTGGGCGCGAACAGGTACGAGTTCGGGTCGCTGACCGATGCGAC
GTTCCGGCTGGTGCCGCTGCTGGAGCGCGGTGTGTCGGCGGGCTGGCCGTGGGAGATGGACGCGCAGGCTGCGTGA

Upstream 100 bases:

>100_bases
ATGGCAGAACGCTGGTCCTAAAAGACACCTGAGCCGCCCCGTCGTCAGCACCGTCGAAGCCTCCCTCCAAGTCCAGGAAC
CCCTGCAGGGAGGCACTTTC

Downstream 100 bases:

>100_bases
CGGGAGGAACACGAGTGTCTCGCTGGTGGAGTCTGGCTAAGGACTGGTGGTTCAACTTCCACCAGCGGGGCATCTTCGCG
CACTGCCCCGGCACCTTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: TROVE Domain Protein; Ribonucleoprotein-Like; Trove Domain-Containing Protein; 60-KDa SS-A/Ro Ribonucleoprotein; Ribonucleoprotein-Related Protein

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MSRFNTKAARPANTAVGPIKTKAKKTTVTHEGAPAHLRDARSELFLLAVTNFVGQDTFYESAAVRDGRYQKLVRKMAVKD
GEWTANFLAWLRGPEANMRTASLVGAAEYVKARLEAGLAGDNRHVIASVLQRADEPAEMLAYWTSTYGRKVPQPVKRGVA
DAAVRLYNERSLLKYDTDSKGYRFGDVIDLTHPIPKSAWQSDLFRHAIDRRHNRDNAIPETLQTVIANATFKTYTPLYLD
RLAESGELTDALSNAGMTWEQLGSFGAWTAARWEAMIPSMGYMALLRNLRNFDEAGLSDEAAAVVAARLSDPDEVARSRQ
LPFRFLSAYEQVPSLRWGHALDKALGHSLRNLPALPGRTLILIDTSASMSSMGYSARSKVTPVKAAAVFGVALGAHLGGN
ADIYGFASGEFKHQLSKGASPIKEIKRFVKRVGEVGHGTDIAGAVRRQYKGHDRVFIISDMQTQTRGITNPIPGHVPVYG
FNLGGYKPAAYPLGANRYEFGSLTDATFRLVPLLERGVSAGWPWEMDAQAA

Sequences:

>Translated_531_residues
MSRFNTKAARPANTAVGPIKTKAKKTTVTHEGAPAHLRDARSELFLLAVTNFVGQDTFYESAAVRDGRYQKLVRKMAVKD
GEWTANFLAWLRGPEANMRTASLVGAAEYVKARLEAGLAGDNRHVIASVLQRADEPAEMLAYWTSTYGRKVPQPVKRGVA
DAAVRLYNERSLLKYDTDSKGYRFGDVIDLTHPIPKSAWQSDLFRHAIDRRHNRDNAIPETLQTVIANATFKTYTPLYLD
RLAESGELTDALSNAGMTWEQLGSFGAWTAARWEAMIPSMGYMALLRNLRNFDEAGLSDEAAAVVAARLSDPDEVARSRQ
LPFRFLSAYEQVPSLRWGHALDKALGHSLRNLPALPGRTLILIDTSASMSSMGYSARSKVTPVKAAAVFGVALGAHLGGN
ADIYGFASGEFKHQLSKGASPIKEIKRFVKRVGEVGHGTDIAGAVRRQYKGHDRVFIISDMQTQTRGITNPIPGHVPVYG
FNLGGYKPAAYPLGANRYEFGSLTDATFRLVPLLERGVSAGWPWEMDAQAA
>Mature_530_residues
SRFNTKAARPANTAVGPIKTKAKKTTVTHEGAPAHLRDARSELFLLAVTNFVGQDTFYESAAVRDGRYQKLVRKMAVKDG
EWTANFLAWLRGPEANMRTASLVGAAEYVKARLEAGLAGDNRHVIASVLQRADEPAEMLAYWTSTYGRKVPQPVKRGVAD
AAVRLYNERSLLKYDTDSKGYRFGDVIDLTHPIPKSAWQSDLFRHAIDRRHNRDNAIPETLQTVIANATFKTYTPLYLDR
LAESGELTDALSNAGMTWEQLGSFGAWTAARWEAMIPSMGYMALLRNLRNFDEAGLSDEAAAVVAARLSDPDEVARSRQL
PFRFLSAYEQVPSLRWGHALDKALGHSLRNLPALPGRTLILIDTSASMSSMGYSARSKVTPVKAAAVFGVALGAHLGGNA
DIYGFASGEFKHQLSKGASPIKEIKRFVKRVGEVGHGTDIAGAVRRQYKGHDRVFIISDMQTQTRGITNPIPGHVPVYGF
NLGGYKPAAYPLGANRYEFGSLTDATFRLVPLLERGVSAGWPWEMDAQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58257; Mature: 58126

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50988 TROVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFNTKAARPANTAVGPIKTKAKKTTVTHEGAPAHLRDARSELFLLAVTNFVGQDTFYE
CCCCCCCCCCCCCCCCCCCCCCCHHCEEECCCCCHHHHHHHHHEEHHHHHHHHCCCHHHH
SAAVRDGRYQKLVRKMAVKDGEWTANFLAWLRGPEANMRTASLVGAAEYVKARLEAGLAG
HHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DNRHVIASVLQRADEPAEMLAYWTSTYGRKVPQPVKRGVADAAVRLYNERSLLKYDTDSK
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
GYRFGDVIDLTHPIPKSAWQSDLFRHAIDRRHNRDNAIPETLQTVIANATFKTYTPLYLD
CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHHH
RLAESGELTDALSNAGMTWEQLGSFGAWTAARWEAMIPSMGYMALLRNLRNFDEAGLSDE
HHHCCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
AAAVVAARLSDPDEVARSRQLPFRFLSAYEQVPSLRWGHALDKALGHSLRNLPALPGRTL
HHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
ILIDTSASMSSMGYSARSKVTPVKAAAVFGVALGAHLGGNADIYGFASGEFKHQLSKGAS
EEEECCCCHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCC
PIKEIKRFVKRVGEVGHGTDIAGAVRRQYKGHDRVFIISDMQTQTRGITNPIPGHVPVYG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCEEE
FNLGGYKPAAYPLGANRYEFGSLTDATFRLVPLLERGVSAGWPWEMDAQAA
ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRFNTKAARPANTAVGPIKTKAKKTTVTHEGAPAHLRDARSELFLLAVTNFVGQDTFYE
CCCCCCCCCCCCCCCCCCCCCCHHCEEECCCCCHHHHHHHHHEEHHHHHHHHCCCHHHH
SAAVRDGRYQKLVRKMAVKDGEWTANFLAWLRGPEANMRTASLVGAAEYVKARLEAGLAG
HHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DNRHVIASVLQRADEPAEMLAYWTSTYGRKVPQPVKRGVADAAVRLYNERSLLKYDTDSK
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
GYRFGDVIDLTHPIPKSAWQSDLFRHAIDRRHNRDNAIPETLQTVIANATFKTYTPLYLD
CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHHH
RLAESGELTDALSNAGMTWEQLGSFGAWTAARWEAMIPSMGYMALLRNLRNFDEAGLSDE
HHHCCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
AAAVVAARLSDPDEVARSRQLPFRFLSAYEQVPSLRWGHALDKALGHSLRNLPALPGRTL
HHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
ILIDTSASMSSMGYSARSKVTPVKAAAVFGVALGAHLGGNADIYGFASGEFKHQLSKGAS
EEEECCCCHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCC
PIKEIKRFVKRVGEVGHGTDIAGAVRRQYKGHDRVFIISDMQTQTRGITNPIPGHVPVYG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCEEE
FNLGGYKPAAYPLGANRYEFGSLTDATFRLVPLLERGVSAGWPWEMDAQAA
ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA