Click here to switch to the map view.

The map label for this gene is 54025897

Identifier: 54025897

GI number: 54025897

Start: 4130325

End: 4130831

Strand: Reverse

Name: 54025897

Synonym: nfa39270

Alternate gene names: NA

Gene position: 4130831-4130325 (Counterclockwise)

Preceding gene: 54025899

Following gene: 54025896

Centisome position: 68.6

GC content: 62.33

Gene sequence:

>507_bases
TTGAATCTTGGTCGATCAACCAACTACCGGAGACCTCGCCATATCTCAAACCCCCAGCCTGCCAAACAGTCCCACACCAC
CAGCGCTACTTCGAGACACTGCCTAGGCCGCTCGATGAACGACAACATCGAATCGGGTTATCACCCAGAAGTCTTCCGCG
ACCGGCCCCTGTACAGCATCGTCGTCCACGAGTTCGGTCACGTCCTCGACATCACCAGCGCGCGTCGCACCCGCAGGGGC
GCAGCAAGCGAACTGGCGAACCACTTCGGCGCTCACTACCCGCAGCAGCCGGGTGAGAAGGGCATGCAGTTCCTGTCCCG
GATGAGCCGCTGGATCGGCCTGCTCAGCGGATACAGTTTCGTCAACGGCAACCGGCAGGGTCAGCTGAATCCCGGCGAAG
CGGTCGCGAACGCGTTCGCGGAAGTCGAGATCGGCGGTGACCGCGCGAGCGAGCCCGCGCAGGTGCTGTACCGGCTGCTG
ATAACCGAATTCAGGAGAGGGCGATGA

Upstream 100 bases:

>100_bases
TCGGGGTGGGTAGCAGCGGTTCCAGCCGTGCCCATTGGGCATCGGACAGATCCGCTCGCGCGGTCACCGCTAGAGTGGTC
ACGAGGTCTCCGGTGTTCAG

Downstream 100 bases:

>100_bases
AGCGCGACCGGCCGACCGCGGATGAAGTTCGCCGCGCATTCGACGCCGAACTGGCGAACTCCCTGACCGGCGCCGGTCCC
CGCACCGACTCCGGGCTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNLGRSTNYRRPRHISNPQPAKQSHTTSATSRHCLGRSMNDNIESGYHPEVFRDRPLYSIVVHEFGHVLDITSARRTRRG
AASELANHFGAHYPQQPGEKGMQFLSRMSRWIGLLSGYSFVNGNRQGQLNPGEAVANAFAEVEIGGDRASEPAQVLYRLL
ITEFRRGR

Sequences:

>Translated_168_residues
MNLGRSTNYRRPRHISNPQPAKQSHTTSATSRHCLGRSMNDNIESGYHPEVFRDRPLYSIVVHEFGHVLDITSARRTRRG
AASELANHFGAHYPQQPGEKGMQFLSRMSRWIGLLSGYSFVNGNRQGQLNPGEAVANAFAEVEIGGDRASEPAQVLYRLL
ITEFRRGR
>Mature_168_residues
MNLGRSTNYRRPRHISNPQPAKQSHTTSATSRHCLGRSMNDNIESGYHPEVFRDRPLYSIVVHEFGHVLDITSARRTRRG
AASELANHFGAHYPQQPGEKGMQFLSRMSRWIGLLSGYSFVNGNRQGQLNPGEAVANAFAEVEIGGDRASEPAQVLYRLL
ITEFRRGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18904; Mature: 18904

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLGRSTNYRRPRHISNPQPAKQSHTTSATSRHCLGRSMNDNIESGYHPEVFRDRPLYSI
CCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHHH
VVHEFGHVLDITSARRTRRGAASELANHFGAHYPQQPGEKGMQFLSRMSRWIGLLSGYSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
VNGNRQGQLNPGEAVANAFAEVEIGGDRASEPAQVLYRLLITEFRRGR
CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLGRSTNYRRPRHISNPQPAKQSHTTSATSRHCLGRSMNDNIESGYHPEVFRDRPLYSI
CCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHHH
VVHEFGHVLDITSARRTRRGAASELANHFGAHYPQQPGEKGMQFLSRMSRWIGLLSGYSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
VNGNRQGQLNPGEAVANAFAEVEIGGDRASEPAQVLYRLLITEFRRGR
CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA