| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025882
Identifier: 54025882
GI number: 54025882
Start: 4116981
End: 4117910
Strand: Reverse
Name: 54025882
Synonym: nfa39120
Alternate gene names: NA
Gene position: 4117910-4116981 (Counterclockwise)
Preceding gene: 54025883
Following gene: 54025881
Centisome position: 68.39
GC content: 59.89
Gene sequence:
>930_bases TTGATGCGGGAATCTGCCCGCGTCGAATTCTTCGGTCCTGACGGCTTGCATTTCATCGTCAATGGCGCGGGTGCGTCGCG GAAGCTCTTTCTGTCCTCGGACATCAAAGGGATCTACGACGCACCCGTCCAGACGCGACGGAAGTCGAGCGCGTTTCAGA AGGGTTCGACCTACCTGGGCAAGTCATACAAAGAGCGGCGCATCACCTTCGGTGTCGACATCAAAGGCGACACGCCGGAG GAATGGCAGCAGCTACAGGACGACTGGAATTCCATATGGGATTACGAACCTGACCCGTGGGATCCAGACTCGACGCTGAC GAAAATGTCGATCACGACCCCGATATCGGGGACGCGCAGCCTATGGCTGGCGAAAGACGACACGGTCGAATTCGAGTCGA AACACGATCCGCACATCACACGGTCGTCGCGTGTGTCGATGGCTGTGGTCGCGGACCAGCCCTTCTTCTTCGAAGACAAA TGGGAGAACAGCCCGTACGACTATTTTGAGACCGGCTCGGCCGGAACCTCGGAAGGGTTCGTCACCATTTCCAACCCCTG CGATCAGCCGATGTGGCTGCAATGGGTGGTCACCCGCGGCAAGTGGACGCTTCCTGACTTCTCCTGGAGGGGGAAGAAGC ACCATAGGGTGCCGGGCGGGGAATGGGCGAACCGGAAGATCACCCTGCCTGAATTGACCGCGCTGGAGGGCGGCGCCCGG ATCACTCTCTACCGGGACAAACTTCAGGTCCGCGACTTCGCGGGCACTAATCTGGCAGGCCGCATGAACGGCATCTCATT CGAGCATGTCGTCCCACCGAAAACCCCGGAAACCAATCTTCCGGTCAAGGTTGAAAACGCGCCTGTCGGCGGCGGCCGTG TCGAAGTCTACTGCCAGCGACGCTGGGGCCACGCATGGGAGAGCCGATGA
Upstream 100 bases:
>100_bases CGATCCAGACGCGCGACGTTGATGAGGGGTTCCGGAAGGCGCAGCAAATCGCTGACTTGCGCGCTATCCAGCACACTGGC ACTGCAAGGGGCTAATCACG
Downstream 100 bases:
>100_bases CCGATCTGCTCGAACTCTCCCCCGAAGAACAGTGCCGCGCGATCTGGGAAGCCACCCTCGCCGCGGAAGAAGCCGACCGA CGCGCGCGCCTGGTACCGCC
Product: putative phage tail
Products: NA
Alternate protein names: Phage Tail
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MMRESARVEFFGPDGLHFIVNGAGASRKLFLSSDIKGIYDAPVQTRRKSSAFQKGSTYLGKSYKERRITFGVDIKGDTPE EWQQLQDDWNSIWDYEPDPWDPDSTLTKMSITTPISGTRSLWLAKDDTVEFESKHDPHITRSSRVSMAVVADQPFFFEDK WENSPYDYFETGSAGTSEGFVTISNPCDQPMWLQWVVTRGKWTLPDFSWRGKKHHRVPGGEWANRKITLPELTALEGGAR ITLYRDKLQVRDFAGTNLAGRMNGISFEHVVPPKTPETNLPVKVENAPVGGGRVEVYCQRRWGHAWESR
Sequences:
>Translated_309_residues MMRESARVEFFGPDGLHFIVNGAGASRKLFLSSDIKGIYDAPVQTRRKSSAFQKGSTYLGKSYKERRITFGVDIKGDTPE EWQQLQDDWNSIWDYEPDPWDPDSTLTKMSITTPISGTRSLWLAKDDTVEFESKHDPHITRSSRVSMAVVADQPFFFEDK WENSPYDYFETGSAGTSEGFVTISNPCDQPMWLQWVVTRGKWTLPDFSWRGKKHHRVPGGEWANRKITLPELTALEGGAR ITLYRDKLQVRDFAGTNLAGRMNGISFEHVVPPKTPETNLPVKVENAPVGGGRVEVYCQRRWGHAWESR >Mature_309_residues MMRESARVEFFGPDGLHFIVNGAGASRKLFLSSDIKGIYDAPVQTRRKSSAFQKGSTYLGKSYKERRITFGVDIKGDTPE EWQQLQDDWNSIWDYEPDPWDPDSTLTKMSITTPISGTRSLWLAKDDTVEFESKHDPHITRSSRVSMAVVADQPFFFEDK WENSPYDYFETGSAGTSEGFVTISNPCDQPMWLQWVVTRGKWTLPDFSWRGKKHHRVPGGEWANRKITLPELTALEGGAR ITLYRDKLQVRDFAGTNLAGRMNGISFEHVVPPKTPETNLPVKVENAPVGGGRVEVYCQRRWGHAWESR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35211; Mature: 35211
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRESARVEFFGPDGLHFIVNGAGASRKLFLSSDIKGIYDAPVQTRRKSSAFQKGSTYLG CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHC KSYKERRITFGVDIKGDTPEEWQQLQDDWNSIWDYEPDPWDPDSTLTKMSITTPISGTRS CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCE LWLAKDDTVEFESKHDPHITRSSRVSMAVVADQPFFFEDKWENSPYDYFETGSAGTSEGF EEEECCCCEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCEEECCCCCCCCCE VTISNPCDQPMWLQWVVTRGKWTLPDFSWRGKKHHRVPGGEWANRKITLPELTALEGGAR EEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCE ITLYRDKLQVRDFAGTNLAGRMNGISFEHVVPPKTPETNLPVKVENAPVGGGRVEVYCQR EEEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCEEEEEEEE RWGHAWESR CCCCCCCCC >Mature Secondary Structure MMRESARVEFFGPDGLHFIVNGAGASRKLFLSSDIKGIYDAPVQTRRKSSAFQKGSTYLG CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHC KSYKERRITFGVDIKGDTPEEWQQLQDDWNSIWDYEPDPWDPDSTLTKMSITTPISGTRS CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCE LWLAKDDTVEFESKHDPHITRSSRVSMAVVADQPFFFEDKWENSPYDYFETGSAGTSEGF EEEECCCCEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCEEECCCCCCCCCE VTISNPCDQPMWLQWVVTRGKWTLPDFSWRGKKHHRVPGGEWANRKITLPELTALEGGAR EEECCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCE ITLYRDKLQVRDFAGTNLAGRMNGISFEHVVPPKTPETNLPVKVENAPVGGGRVEVYCQR EEEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCEEEEEEEE RWGHAWESR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA