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The map label for this gene is 54025838

Identifier: 54025838

GI number: 54025838

Start: 4082494

End: 4084575

Strand: Reverse

Name: 54025838

Synonym: nfa38680

Alternate gene names: NA

Gene position: 4084575-4082494 (Counterclockwise)

Preceding gene: 54025839

Following gene: 54025835

Centisome position: 67.84

GC content: 72.48

Gene sequence:

>2082_bases
ATGACCACACCGCGCCGTCCCCGCCGCACGGCGAGCCGCCCCGCGGGCGCGCCCGACCCGGCCGAACAACGCCGCGCCGC
CGAAGCCGCCGCCGAGCGTGCGGAGTCGGCACGGCCCGCGGAACCGGCCGCCGAACCCGCCGCGGAACCGGCCGCCGACC
GGCCCGGCGGGAGCGCCGGTGAGCCCACCGCTCCGGCGGGCACCGACCAGCCCACCGCCCCGGCCAAGGCCGAGCGGCCG
GCCCGTGGCGACCGGGGCGACGCCCGTACCCAGCGTCAGGACAAGCCCGCCCGCGGCGACTCCGGTGAGGGCCGCTCCGC
GGGTGGCCGCCGCTCCGGCCGCGGCGGCAGGCAGGGCCGCGGCCGCGCCGAGCAGTTGCCCGCGCAGCCGCCGGTGGTCG
CGGCACAGGATCGGCTCGGCGCCCCGCCGAAGCTGCCCAAGAACGGCCTGCGGGTGTTCGCGCTCGGCGGTATCGGCGAA
ATCGGCCGCAACATGACGGTTTTCGAGTACGGCGGCAAGCTGCTGATCGTCGACTGTGGCGTGTTGTTCCCCGAGGACCA
GCAGCCCGGTGTGGACCTGATCCTGCCCGACTTCCGGCCCATCGAGGACCGGATGGACGACATCGTCGCGATCGTGCTCA
CCCACGGCCACGAAGACCACATCGGCGCGGTGCCGTTCCTGCTGCGCAACCGCTCCGACATTCCGGTGCTCGGCGCGAAG
TTCACTCTCGCGCTGGTCGCGGCCAAGTGCCGCGAACACCGGCTGCACCCGAAGCTGATCGAGGTGACCGAGGGCGAGAC
CACCTCGCACGGCCCCTTCGAATGCGAGTACTTCGCCGTCAACCACTCCATCCCGGACGCGCTGGCCGTCGCCATCCGCA
CCCCGGCGGGCGTCGCGCTGCACACCGGTGACATCAAGCTCGACCAGCTGCCGCTGGACGGGCGCCTCACCGATCTGGCC
GGGTTCTCCCGCCTGGGCGACGAAGGCGTCGACCTGTTCCTGGTCGACTCCACCAACGCCGAGGTGCCGGGCTTCGTCAC
CCCCGAACGCGAGATCGGCGGCGTCCTGGACACGGTGATCGGCAAGGCCCGTGGCCGGGTGATCGTGGCGTCGTTCGCCA
GCCATGTGCACCGCATCCAGCAGGTCGTGGACGTGGCTCAGAAGTACGGGCGCCGGGTGTGTTTCGTGGGCCGCTCGATG
GTGCGCAACATGCAGATCGCCCAGGATCTCGGGTACTTGACGGTGCCCGACGGCGTGGTCGTCGACCTCGATGTCGCCGC
GACCCTGCCCGGCGACCGCCTGGTGCTGATCTCCACCGGGTCCCAGGGGGAGCCGCTGTCGGCGCTGTCGCGGATGGCGC
GCGGCGACCACCGCCAGATCAACATCCGCCCCGACGACCTGGTGGTGCTGGCGTCCTCGCTGATCCCGGGCAACGAGAAC
TCGGTGTTCGCGGTCGTCAACGGGCTGGCACGGCTCGGCGCCTCGGTCATCACCCAGCAGAACGCCAAGGTGCACGTCTC
CGGGCACGCCTCGGCGGGCGAGCTGCTCTACCTGTACAACGCGGTGCGGCCGACGAACGCGATGCCGGTGCACGGCGAGT
GGCGGCACCTGCGGGCCAACGCGGCGCTGGCTGTCGCGACCGGGGTGCCCGAGGAGCGGGTGGTGCTCGCCGAGGACGGG
GTGGTCGTCGACCTGGTGGACGGGATCGCCTCGATCGTGGGCCGCGTGCCGGTCGGCCACGTCTACGTCGACGGGCTCTC
GGTGGGCGATGTCGGCGAGTCGACGCTGTCCGACCGCCTCGTGCTGGGCGAGGGCGGTTTCATCTCGATCACCGTCGCCA
TCGACGAGACGACCGGAAAGGCCGTCAGCGCACCGGAATTGAGTGGTCGCGGGTTCTCCGACGACCCGACCGCACTGGCC
GAGGCCGCCGAACTCGTGGAGGCCGAACTGCTGCGCCTGGCCGGGGAAGGCATCACCGACACCCACCGCATCGCCCAGGG
TGTGCGCCGCGTGGTCGGGCGCTGGGTGGCCGACACCTACCGGCGCCGTCCGATGATCGTGCCCACCGTCATCGGGGTCT
GA

Upstream 100 bases:

>100_bases
TCGGCATCGACGTGGGCGAGCCCCGGCTGCCGCAGCTCATGCCCAACACCGCCCAACTCGATCAGCTGTCCGCGGATCTG
CGGACAGCGGGGGTTCTCGT

Downstream 100 bases:

>100_bases
GTCCGTTCACGCGAAGGGCCGGGAGGCATGCCTCCCGGCCCTTCGTCACGGCCTCCCGGCCCTCTGTCACGGCTGCGGGC
TCACTGGGCCTGGCAGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 693; Mature: 692

Protein sequence:

>693_residues
MTTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAGEPTAPAGTDQPTAPAKAERP
ARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGRGRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGE
IGRNMTVFEYGGKLLIVDCGVLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVALHTGDIKLDQLPLDGRLTDLA
GFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSM
VRNMQIAQDLGYLTVPDGVVVDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEERVVLAEDG
VVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALA
EAAELVEAELLRLAGEGITDTHRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV

Sequences:

>Translated_693_residues
MTTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAGEPTAPAGTDQPTAPAKAERP
ARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGRGRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGE
IGRNMTVFEYGGKLLIVDCGVLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVALHTGDIKLDQLPLDGRLTDLA
GFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSM
VRNMQIAQDLGYLTVPDGVVVDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEERVVLAEDG
VVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALA
EAAELVEAELLRLAGEGITDTHRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV
>Mature_692_residues
TTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAGEPTAPAGTDQPTAPAKAERPA
RGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGRGRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGEI
GRNMTVFEYGGKLLIVDCGVLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAKF
TLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVALHTGDIKLDQLPLDGRLTDLAG
FSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSMV
RNMQIAQDLGYLTVPDGVVVDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNENS
VFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEERVVLAEDGV
VVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALAE
AAELVEAELLRLAGEGITDTHRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 73239; Mature: 73108

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EPTAPAGTDQPTAPAKAERPARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCG
CHHHHCCCCCCEEECHHHCCCCCCCCCCCCEEEEECCHHHHCCCEEEEEECCEEEEEECC
VLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
EECCCCCCCCCCEECCCCCCHHHHHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCEECHH
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVAL
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHEEEEECCCCEEE
HTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVI
EECCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
GKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSMVRNMQIAQDLGYLTVPDGVV
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCEECCCCEE
VDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
EEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCC
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRAN
CEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHEEECC
AALAVATGVPEERVVLAEDGVVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRL
CEEEEECCCCCCEEEEECCCEEEEHHHHHHHHHHCCCCCEEEECCEECCCCCCHHHCCEE
VLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALAEAAELVEAELLRLAGEGITD
EEECCCEEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
THRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
>Mature Secondary Structure 
TTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EPTAPAGTDQPTAPAKAERPARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCG
CHHHHCCCCCCEEECHHHCCCCCCCCCCCCEEEEECCHHHHCCCEEEEEECCEEEEEECC
VLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
EECCCCCCCCCCEECCCCCCHHHHHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCEECHH
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVAL
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHEEEEECCCCEEE
HTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVI
EECCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
GKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSMVRNMQIAQDLGYLTVPDGVV
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCEECCCCEE
VDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
EEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCC
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRAN
CEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHEEECC
AALAVATGVPEERVVLAEDGVVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRL
CEEEEECCCCCCEEEEECCCEEEEHHHHHHHHHHCCCCCEEEECCEECCCCCCHHHCCEE
VLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALAEAAELVEAELLRLAGEGITD
EEECCCEEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
THRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]