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The map label for this gene is yacO [H]

Identifier: 54025800

GI number: 54025800

Start: 4050036

End: 4050872

Strand: Reverse

Name: yacO [H]

Synonym: nfa38300

Alternate gene names: 54025800

Gene position: 4050872-4050036 (Counterclockwise)

Preceding gene: 54025801

Following gene: 54025799

Centisome position: 67.28

GC content: 71.09

Gene sequence:

>837_bases
GTGACCCGACGAGTCAGCACTCGCAACGCCTCGGTGCAGGTGTGGCAGGCCTATCTGACCAACCGCACCAAACGCCATCG
CGACCGCCGCTTCCTCGTGCAGGGGGTGCGCCCGATCACCCAGGCGCTGGCCGCGGGCTGGCCGCTGGAGACGCTGCTGT
ACCGGCTCGGCGGGCCGGAGTTGTCGGGCTGGGCACGGCAGATCCTCGACACCACCGACGTGCCGTTGGTCGGCCTGGTG
CCCGAGCTGATGGCCGATCTCGGCGAAAAGACCGAGGCCGCACCGGAACTCGTCGCGGTAGCGGTCTCCCGCCAGCCCGA
GCTGGCCGAGTTCGCGCCCGGTGAGCCGGGTGAGGACGCACCCGTGGTCGTGGTGTTCGATCGGCCCAACTCACCCGGTA
ACCTCGGCACCCTGATCCGCTCGGCGGACTCGTTCGGCGCCGCCGCGGTCGTGGTGACCGGGCACGGCGCCGACCAGTAC
GACCCCCGCGCGGTGCGCGCCTCCACCGGTTCGCTGTTCGCGGTGCCGGTGTTCCGGGTGCCCGGTCCGGCGCAGGTGCT
CGAGTTCCGGGACCGCCAGATCGCGCGCGGCATCCCGACCACCGTGGTCGGCACCGACGAGCACGGCACCGCGGCGGTGT
TCGATCACGACTTCCGCGACGCCACCATCCTGGTGATCGGCAACGAGACCAGCGGGATGAGCGCCGCCTGGCAGGATGCC
TGTGACGAACTGGTCGCCATCCCGATGGGCGGTACCGCCAGTTCCCTGGGCGCACCGTCGGCGGGTGCGGTCGCCCTCTA
CGAAATATCCCGGCAGCGGCGGACGTTTGTCCGATGA

Upstream 100 bases:

>100_bases
TGCGCTGGCTCGACGGCGCCGACCCCGGCCTCGTGACCACGGCACTGGCCCTGCTCGGCGACGCCGCGGCGGCGCCCGCG
ACCACGGAACGGACCACGCA

Downstream 100 bases:

>100_bases
CGACGGAAACGGAGACCACAGGCGTGACGGACATCGGCGGGACGGACATCGAGTTCACGAAGGGCCACGGCACCGAGAAC
GACTTCGTCGTGCTGCCCGA

Product: putative ribosomal RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTRRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPELSGWARQILDTTDVPLVGLV
PELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQY
DPRAVRASTGSLFAVPVFRVPGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDA
CDELVAIPMGGTASSLGAPSAGAVALYEISRQRRTFVR

Sequences:

>Translated_278_residues
MTRRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPELSGWARQILDTTDVPLVGLV
PELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQY
DPRAVRASTGSLFAVPVFRVPGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDA
CDELVAIPMGGTASSLGAPSAGAVALYEISRQRRTFVR
>Mature_277_residues
TRRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPELSGWARQILDTTDVPLVGLVP
ELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYD
PRAVRASTGSLFAVPVFRVPGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDAC
DELVAIPMGGTASSLGAPSAGAVALYEISRQRRTFVR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=155, Percent_Identity=31.6129032258064, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29737; Mature: 29606

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
LSGWARQILDTTDVPLVGLVPELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDA
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCHHHCCCCCCCCCC
PVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVFRV
CEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEC
PGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDA
CCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHH
CDELVAIPMGGTASSLGAPSAGAVALYEISRQRRTFVR
HHHEEEECCCCCHHHCCCCCCCCEEHHHHHHHHHHCCC
>Mature Secondary Structure 
TRRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
LSGWARQILDTTDVPLVGLVPELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDA
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCHHHCCCCCCCCCC
PVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVFRV
CEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEC
PGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDA
CCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHH
CDELVAIPMGGTASSLGAPSAGAVALYEISRQRRTFVR
HHHEEEECCCCCHHHCCCCCCCCEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 7510287; 3145906 [H]