| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is yhcH [H]
Identifier: 54025692
GI number: 54025692
Start: 3941087
End: 3941995
Strand: Reverse
Name: yhcH [H]
Synonym: nfa37220
Alternate gene names: 54025692
Gene position: 3941995-3941087 (Counterclockwise)
Preceding gene: 54025693
Following gene: 54025691
Centisome position: 65.47
GC content: 74.37
Gene sequence:
>909_bases ATGATCGAGGTCGCCGGTCTCACCAAGACATTCGGCGCGGTCGTCGCGGTCGACGATCTGGCGTTCACCGTCCCCGACGG CGCCGTCACCGGCTTCCTCGGCCCGAACGGCGCGGGCAAGTCCACCACCATGCGCTGCCTGCTCGGTCTCGACCTGCCCG ACGCGGGGCGGGTGCTCGTCGACGGACAGCCCCTGCGCGACCACCACCGGCCCGCCCGGGTCGTCGGCGCGGTCCTCGAC ACCGCCTGGTATCACCCCGGCCGGACCGGCCGCGGCCACCTGCGGGTGGTCGCCGCCTCCGCCGGGCTGCCGCCGACCCG GGTGGACGAGGTGCTGGCGGCGGTGGGCTTGACCACCGCCGCCGACCGGCGCGTCCGCGGCTACTCCCTCGGCATGCGGC AGCGCCTCGGCCTGGCCGCGGCGCTGCTGGGCGACCCGCGGAATCTCGTTCTCGACGAACCGGTCAACGGCTTGGATCCG GAAGGCGTGCACTGGATGCGGTCGGTGCTGCGGCAGGCGGCCGACGCCGGTCGCGCCGTGCTGGTCTCCTCCCATCTGCT CGCCGAGATGCAGGTGATCGCCGACCGCCTGGTGGTCCTCGGCCGCGGCAGACTCCTCGGCGAGGGCACGCTCGCCGCCT TCCTGGACCGCCACGGCCACGTCCTCGTCCGCACCGACGGCGACGAGCTGCTCGTGGCCCGCCTGCGGGAACTGGGCGTC GTCGCGGAACGGACCGCGGCCGGGCTGCGGGTGGCGCTCGATCACCGAATTCCCGATGCCCCGGCGGTATCCCGGCTGTG TCGCGACCTCGGACTGCTCGTCACCGCGCTCGGGGAGGCGGCCCCCACCCTCGAGGACGTCTTCCTCGACCTCACCGACC GCACCGCCGAATTCCGCGGCGAACGGTGA
Upstream 100 bases:
>100_bases GCGTGGTCGTGGTCGCGCTCGTGGTCGCGCTGGTCCGTCATTCGCTCGACCGGTTGATCCAGCAGCTCGCCGGTCGATTC ACCCGGGCCGGCGGTGACCG
Downstream 100 bases:
>100_bases CCGCCATGCGCTCCGCACTGACCGCCGACCTCGTGCGCCTCACGACGCTGCGCACCACGCCGGTGTACGCCGCGCTGCTG ATCGGCGCCTGCGTCGGCCC
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MIEVAGLTKTFGAVVAVDDLAFTVPDGAVTGFLGPNGAGKSTTMRCLLGLDLPDAGRVLVDGQPLRDHHRPARVVGAVLD TAWYHPGRTGRGHLRVVAASAGLPPTRVDEVLAAVGLTTAADRRVRGYSLGMRQRLGLAAALLGDPRNLVLDEPVNGLDP EGVHWMRSVLRQAADAGRAVLVSSHLLAEMQVIADRLVVLGRGRLLGEGTLAAFLDRHGHVLVRTDGDELLVARLRELGV VAERTAAGLRVALDHRIPDAPAVSRLCRDLGLLVTALGEAAPTLEDVFLDLTDRTAEFRGER
Sequences:
>Translated_302_residues MIEVAGLTKTFGAVVAVDDLAFTVPDGAVTGFLGPNGAGKSTTMRCLLGLDLPDAGRVLVDGQPLRDHHRPARVVGAVLD TAWYHPGRTGRGHLRVVAASAGLPPTRVDEVLAAVGLTTAADRRVRGYSLGMRQRLGLAAALLGDPRNLVLDEPVNGLDP EGVHWMRSVLRQAADAGRAVLVSSHLLAEMQVIADRLVVLGRGRLLGEGTLAAFLDRHGHVLVRTDGDELLVARLRELGV VAERTAAGLRVALDHRIPDAPAVSRLCRDLGLLVTALGEAAPTLEDVFLDLTDRTAEFRGER >Mature_302_residues MIEVAGLTKTFGAVVAVDDLAFTVPDGAVTGFLGPNGAGKSTTMRCLLGLDLPDAGRVLVDGQPLRDHHRPARVVGAVLD TAWYHPGRTGRGHLRVVAASAGLPPTRVDEVLAAVGLTTAADRRVRGYSLGMRQRLGLAAALLGDPRNLVLDEPVNGLDP EGVHWMRSVLRQAADAGRAVLVSSHLLAEMQVIADRLVVLGRGRLLGEGTLAAFLDRHGHVLVRTDGDELLVARLRELGV VAERTAAGLRVALDHRIPDAPAVSRLCRDLGLLVTALGEAAPTLEDVFLDLTDRTAEFRGER
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=242, Percent_Identity=30.9917355371901, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=33.0188679245283, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=33.0188679245283, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI6005701, Length=242, Percent_Identity=30.5785123966942, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI45446740, Length=318, Percent_Identity=26.4150943396226, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI47078218, Length=318, Percent_Identity=26.4150943396226, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI150417984, Length=218, Percent_Identity=34.8623853211009, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI153792144, Length=231, Percent_Identity=28.1385281385281, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=31.6037735849057, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI105990541, Length=232, Percent_Identity=30.6034482758621, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI27262624, Length=316, Percent_Identity=28.1645569620253, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI27262626, Length=316, Percent_Identity=28.1645569620253, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=32.0754716981132, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=31.7307692307692, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI21536376, Length=237, Percent_Identity=28.2700421940928, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI46592915, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI46592898, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI46592978, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI46592971, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI46592956, Length=195, Percent_Identity=30.2564102564103, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI46592964, Length=195, Percent_Identity=30.2564102564103, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI215820660, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI20143975, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI171184400, Length=229, Percent_Identity=29.6943231441048, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9955968, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9955966, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI45243524, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI11967969, Length=215, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9665248, Length=223, Percent_Identity=30.9417040358744, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI73747915, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI62526033, Length=195, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI11967971, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI156105685, Length=220, Percent_Identity=30.4545454545455, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=34.1013824884793, Blast_Score=114, Evalue=9e-27, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.1369863013699, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=29.6296296296296, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081791, Length=254, Percent_Identity=28.740157480315, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=31.3364055299539, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=30.5676855895196, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=28.0701754385965, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=30.6666666666667, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=28.7081339712919, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=29.7777777777778, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=27.6497695852535, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=28.936170212766, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788761, Length=213, Percent_Identity=30.5164319248826, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=27.8260869565217, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=29.5081967213115, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=29.9107142857143, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI1786872, Length=225, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788472, Length=227, Percent_Identity=23.3480176211454, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=28.3653846153846, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789032, Length=256, Percent_Identity=29.6875, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=26.9911504424779, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI2367384, Length=178, Percent_Identity=33.1460674157303, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786803, Length=215, Percent_Identity=28.3720930232558, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=32.3671497584541, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787792, Length=203, Percent_Identity=27.0935960591133, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788506, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788644, Length=233, Percent_Identity=26.1802575107296, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=26.5700483091787, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=25.9615384615385, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787164, Length=200, Percent_Identity=29.5, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=32.8502415458937, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17565586, Length=316, Percent_Identity=28.7974683544304, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI71983523, Length=315, Percent_Identity=26.984126984127, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71983516, Length=315, Percent_Identity=26.984126984127, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71983510, Length=315, Percent_Identity=26.984126984127, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17510237, Length=262, Percent_Identity=26.7175572519084, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI115534520, Length=231, Percent_Identity=29.4372294372294, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17558664, Length=209, Percent_Identity=29.1866028708134, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565938, Length=227, Percent_Identity=27.3127753303965, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193211017, Length=210, Percent_Identity=26.1904761904762, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211015, Length=210, Percent_Identity=26.1904761904762, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=210, Percent_Identity=26.1904761904762, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533592, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17552010, Length=305, Percent_Identity=27.5409836065574, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202349, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24666092, Length=318, Percent_Identity=27.0440251572327, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI221512771, Length=315, Percent_Identity=27.3015873015873, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24648314, Length=216, Percent_Identity=31.0185185185185, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=28.5046728971963, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI28573571, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI28573573, Length=258, Percent_Identity=29.4573643410853, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=28.9719626168224, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=28.9719626168224, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI116007184, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI17136592, Length=278, Percent_Identity=26.978417266187, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI161076682, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076684, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581617, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581615, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581407, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI21357907, Length=251, Percent_Identity=25.8964143426295, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI45552199, Length=203, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571871, Length=169, Percent_Identity=33.1360946745562, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=217, Percent_Identity=27.1889400921659, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581409, Length=187, Percent_Identity=32.0855614973262, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85725262, Length=209, Percent_Identity=29.6650717703349, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 32031; Mature: 32031
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEVAGLTKTFGAVVAVDDLAFTVPDGAVTGFLGPNGAGKSTTMRCLLGLDLPDAGRVLV CEEECCCHHHHHHEEEECCEEEECCCCCEEECCCCCCCCCHHHEEEEEECCCCCCCEEEE DGQPLRDHHRPARVVGAVLDTAWYHPGRTGRGHLRVVAASAGLPPTRVDEVLAAVGLTTA CCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHH ADRRVRGYSLGMRQRLGLAAALLGDPRNLVLDEPVNGLDPEGVHWMRSVLRQAADAGRAV HCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE LVSSHLLAEMQVIADRLVVLGRGRLLGEGTLAAFLDRHGHVLVRTDGDELLVARLRELGV EHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCH VAERTAAGLRVALDHRIPDAPAVSRLCRDLGLLVTALGEAAPTLEDVFLDLTDRTAEFRG HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCC ER CC >Mature Secondary Structure MIEVAGLTKTFGAVVAVDDLAFTVPDGAVTGFLGPNGAGKSTTMRCLLGLDLPDAGRVLV CEEECCCHHHHHHEEEECCEEEECCCCCEEECCCCCCCCCHHHEEEEEECCCCCCCEEEE DGQPLRDHHRPARVVGAVLDTAWYHPGRTGRGHLRVVAASAGLPPTRVDEVLAAVGLTTA CCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHH ADRRVRGYSLGMRQRLGLAAALLGDPRNLVLDEPVNGLDPEGVHWMRSVLRQAADAGRAV HCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE LVSSHLLAEMQVIADRLVVLGRGRLLGEGTLAAFLDRHGHVLVRTDGDELLVARLRELGV EHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCH VAERTAAGLRVALDHRIPDAPAVSRLCRDLGLLVTALGEAAPTLEDVFLDLTDRTAEFRG HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCC ER CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]