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The map label for this gene is ydiF [H]

Identifier: 54025657

GI number: 54025657

Start: 3904221

End: 3905819

Strand: Reverse

Name: ydiF [H]

Synonym: nfa36870

Alternate gene names: 54025657

Gene position: 3905819-3904221 (Counterclockwise)

Preceding gene: 54025658

Following gene: 54025656

Centisome position: 64.87

GC content: 72.55

Gene sequence:

>1599_bases
ATGACCTCTCTGTCCTTCTCCGATCTCACCTTCGCCTGGCCCGACGGCACCCCCGTCTTCGACGGCCTGGACGGCGACCT
CGGTCCCGGCCACATCGGCCTGGTCGGCGCCAACGGCGCGGGAAAGTCCACCCTGCTGCGGCTGATCGCCGGTGAGCTGC
GTCCGCTGCGCGGGTCGGTCACCGTGCGCGGCCGGCTCGGGTATCTGCGCCAGGACCTCGGCCTCGCCGACGCCCAGCGC
ATCGACCACCTCCTCGGCATCGCCGAGATCCGCGCGGCACTGCACCGCATCGAAGCGGGAGCCGCCGCCGAGGACGACTT
CGACGTCGTCGGTGCCGCCTGGGACGTCGAGGAGCGGGCGGTGGCGCTGCTGGCCCGGCTCGGCCTGGCGCATCTCGCCG
ACTCCGTGGCCGCACTCGATCGCCGCCTCGACACCCTGTCCGGCGGCGAGACGGTGCTGCTCGGGCTGGCTGCCGAACTG
CTCGCCGACCCCGAGGTGTTGCTGCTCGACGAGCCGACCAACAACCTGGATCGTGCTGCGCGCGAACGCCTCTACGACGT
CGTCGAGCAGTTCTCCGACACCGTGCTCGCGGTGAGCCACGACCGGGAGCTGCTCGAGCGCGCCGACGCCATCGCCGAGC
TGCGCGAGGGGGAGCTACGGCTGTTCGGCGGCAACTACACCGACTACGAACAGCAGGTCGCGGCCGAACAGCGGGCAGCC
GCGGCGGCGCTGCGCGCCGCACGCAATGATGTGCGCAGGCAGTCGCGGGAACTGGTCGAGACGAGGACCAAGCTCGATCG
CCGGCGGCGCTACGGCGACAAGTCCGCCGACAACATGCCGAAAATCCTTGCGGGCGCGCGGAAACGCGCCGCGCAGGTGT
CGGCGGGAAAGCTGCGCAACACCCAAATCGAGCGGCTCGACGCGGCCAACGAACAGCTGCGCCGAGCCGAGGAGTCGGTG
CGCGACGACCACGAGATCCGGCTCGATCTGCCCGGCACCCGGCTGCATCCCGGCCAGGACGTCCTCGACCTCGTCGATGT
CGACCTGCCCTGGGGCGCGGCCGCCGAGCGCCGGGTGACGTTGCGCATCAGCGGCCCCGAGCGGATCGCGCTGACCGGGC
GCAACGGTGCGGGCAAGACGACCCTGCTGCGGCGGATCGCCGCCGCGCCGCCGAAGGTGCCCTGGGGCCTGCTGCCGCAG
CGGCTGGACGTCTTCGATCCGGACCGGACCGTGTTCGAGAACGTCGCCGCCACCGCGCCGCAGGCGCCGCCGGTCCGGAT
CCGTGCGCAACTGGCCCGGCTGCTGTTCCGTGGCGCCGACGCCGACGTCCCGGCCGCCGTGCTGTCGGGCGGGGAGCGGC
TGCGCGCGGCCCTGGCCATGCTGCTGCTGGCCGAGCCCGCGCCGAAGCTGCTGCTGCTCGACGAACCGACCAACAACCTC
GATCTGCCGAGCCTGCGGCACCTGACGCAGGCGCTGGCCGGGTTCGAGGGCGCGCTGGTGGTGGTCAGCCACGATCCGCG
GTTCCTGGACGAGATCGGAGTCACGCGCCGGCTGGAGCTGACCGACGAGGGACTGGTGCCGGCGAACCCGGCCGGATAA

Upstream 100 bases:

>100_bases
CTCGTCCCCGACGATCGGAGCCCATGGTGCTTTCCTGAGGTCTGCCTCTCGTGCGGCCCGCATTCGCGCGCCGCGTCACG
ACGCGACTTCGAGGACGCCC

Downstream 100 bases:

>100_bases
TTCGCTTTGCGAAAGCGGAATTGAGTACGCTCGGGGCTGTGCAGCTGTCCCGGTTCACCGATCTCGGCCTGCGCGCGATG
ATGCGCCTGGCCGTCGGCGG

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MTSLSFSDLTFAWPDGTPVFDGLDGDLGPGHIGLVGANGAGKSTLLRLIAGELRPLRGSVTVRGRLGYLRQDLGLADAQR
IDHLLGIAEIRAALHRIEAGAAAEDDFDVVGAAWDVEERAVALLARLGLAHLADSVAALDRRLDTLSGGETVLLGLAAEL
LADPEVLLLDEPTNNLDRAARERLYDVVEQFSDTVLAVSHDRELLERADAIAELREGELRLFGGNYTDYEQQVAAEQRAA
AAALRAARNDVRRQSRELVETRTKLDRRRRYGDKSADNMPKILAGARKRAAQVSAGKLRNTQIERLDAANEQLRRAEESV
RDDHEIRLDLPGTRLHPGQDVLDLVDVDLPWGAAAERRVTLRISGPERIALTGRNGAGKTTLLRRIAAAPPKVPWGLLPQ
RLDVFDPDRTVFENVAATAPQAPPVRIRAQLARLLFRGADADVPAAVLSGGERLRAALAMLLLAEPAPKLLLLDEPTNNL
DLPSLRHLTQALAGFEGALVVVSHDPRFLDEIGVTRRLELTDEGLVPANPAG

Sequences:

>Translated_532_residues
MTSLSFSDLTFAWPDGTPVFDGLDGDLGPGHIGLVGANGAGKSTLLRLIAGELRPLRGSVTVRGRLGYLRQDLGLADAQR
IDHLLGIAEIRAALHRIEAGAAAEDDFDVVGAAWDVEERAVALLARLGLAHLADSVAALDRRLDTLSGGETVLLGLAAEL
LADPEVLLLDEPTNNLDRAARERLYDVVEQFSDTVLAVSHDRELLERADAIAELREGELRLFGGNYTDYEQQVAAEQRAA
AAALRAARNDVRRQSRELVETRTKLDRRRRYGDKSADNMPKILAGARKRAAQVSAGKLRNTQIERLDAANEQLRRAEESV
RDDHEIRLDLPGTRLHPGQDVLDLVDVDLPWGAAAERRVTLRISGPERIALTGRNGAGKTTLLRRIAAAPPKVPWGLLPQ
RLDVFDPDRTVFENVAATAPQAPPVRIRAQLARLLFRGADADVPAAVLSGGERLRAALAMLLLAEPAPKLLLLDEPTNNL
DLPSLRHLTQALAGFEGALVVVSHDPRFLDEIGVTRRLELTDEGLVPANPAG
>Mature_531_residues
TSLSFSDLTFAWPDGTPVFDGLDGDLGPGHIGLVGANGAGKSTLLRLIAGELRPLRGSVTVRGRLGYLRQDLGLADAQRI
DHLLGIAEIRAALHRIEAGAAAEDDFDVVGAAWDVEERAVALLARLGLAHLADSVAALDRRLDTLSGGETVLLGLAAELL
ADPEVLLLDEPTNNLDRAARERLYDVVEQFSDTVLAVSHDRELLERADAIAELREGELRLFGGNYTDYEQQVAAEQRAAA
AALRAARNDVRRQSRELVETRTKLDRRRRYGDKSADNMPKILAGARKRAAQVSAGKLRNTQIERLDAANEQLRRAEESVR
DDHEIRLDLPGTRLHPGQDVLDLVDVDLPWGAAAERRVTLRISGPERIALTGRNGAGKTTLLRRIAAAPPKVPWGLLPQR
LDVFDPDRTVFENVAATAPQAPPVRIRAQLARLLFRGADADVPAAVLSGGERLRAALAMLLLAEPAPKLLLLDEPTNNLD
LPSLRHLTQALAGFEGALVVVSHDPRFLDEIGVTRRLELTDEGLVPANPAG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=515, Percent_Identity=29.126213592233, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI10947137, Length=512, Percent_Identity=26.3671875, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI27881506, Length=511, Percent_Identity=26.4187866927593, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI10947135, Length=193, Percent_Identity=33.6787564766839, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI69354671, Length=193, Percent_Identity=33.6787564766839, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI11967969, Length=204, Percent_Identity=31.3725490196078, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI27477115, Length=215, Percent_Identity=28.3720930232558, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=31.1320754716981, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI9665248, Length=256, Percent_Identity=28.90625, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=30.6273062730627, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI2367384, Length=533, Percent_Identity=32.6454033771107, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1789751, Length=520, Percent_Identity=29.6153846153846, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1787182, Length=550, Percent_Identity=28.9090909090909, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87081782, Length=567, Percent_Identity=25.5731922398589, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=31.9634703196347, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=30.4932735426009, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=27.7272727272727, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786398, Length=233, Percent_Identity=29.1845493562232, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=28.8793103448276, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI48994997, Length=221, Percent_Identity=29.8642533936652, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=29.7071129707113, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=29.5454545454545, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=28.8135593220339, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=506, Percent_Identity=27.0750988142292, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17559834, Length=510, Percent_Identity=27.6470588235294, Blast_Score=131, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17553372, Length=520, Percent_Identity=26.5384615384615, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=32, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=262, Percent_Identity=28.6259541984733, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115532730, Length=183, Percent_Identity=30.6010928961749, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=248, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=515, Percent_Identity=26.7961165048544, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321121, Length=559, Percent_Identity=27.0125223613596, Blast_Score=126, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=183, Percent_Identity=31.6939890710383, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24666836, Length=510, Percent_Identity=28.6274509803922, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24641342, Length=515, Percent_Identity=27.1844660194175, Blast_Score=134, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24642252, Length=509, Percent_Identity=25.9332023575639, Blast_Score=122, Evalue=7e-28,
Organism=Drosophila melanogaster, GI18859989, Length=509, Percent_Identity=25.9332023575639, Blast_Score=122, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281363262, Length=233, Percent_Identity=29.6137339055794, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI45550390, Length=236, Percent_Identity=27.1186440677966, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24653245, Length=233, Percent_Identity=29.6137339055794, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725262, Length=219, Percent_Identity=29.6803652968037, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 57654; Mature: 57523

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSFSDLTFAWPDGTPVFDGLDGDLGPGHIGLVGANGAGKSTLLRLIAGELRPLRGSV
CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
TVRGRLGYLRQDLGLADAQRIDHLLGIAEIRAALHRIEAGAAAEDDFDVVGAAWDVEERA
EEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
VALLARLGLAHLADSVAALDRRLDTLSGGETVLLGLAAELLADPEVLLLDEPTNNLDRAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
RERLYDVVEQFSDTVLAVSHDRELLERADAIAELREGELRLFGGNYTDYEQQVAAEQRAA
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
AAALRAARNDVRRQSRELVETRTKLDRRRRYGDKSADNMPKILAGARKRAAQVSAGKLRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
TQIERLDAANEQLRRAEESVRDDHEIRLDLPGTRLHPGQDVLDLVDVDLPWGAAAERRVT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCEEE
LRISGPERIALTGRNGAGKTTLLRRIAAAPPKVPWGLLPQRLDVFDPDRTVFENVAATAP
EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
QAPPVRIRAQLARLLFRGADADVPAAVLSGGERLRAALAMLLLAEPAPKLLLLDEPTNNL
CCCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
DLPSLRHLTQALAGFEGALVVVSHDPRFLDEIGVTRRLELTDEGLVPANPAG
CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TSLSFSDLTFAWPDGTPVFDGLDGDLGPGHIGLVGANGAGKSTLLRLIAGELRPLRGSV
CCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
TVRGRLGYLRQDLGLADAQRIDHLLGIAEIRAALHRIEAGAAAEDDFDVVGAAWDVEERA
EEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
VALLARLGLAHLADSVAALDRRLDTLSGGETVLLGLAAELLADPEVLLLDEPTNNLDRAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
RERLYDVVEQFSDTVLAVSHDRELLERADAIAELREGELRLFGGNYTDYEQQVAAEQRAA
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
AAALRAARNDVRRQSRELVETRTKLDRRRRYGDKSADNMPKILAGARKRAAQVSAGKLRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
TQIERLDAANEQLRRAEESVRDDHEIRLDLPGTRLHPGQDVLDLVDVDLPWGAAAERRVT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCEEE
LRISGPERIALTGRNGAGKTTLLRRIAAAPPKVPWGLLPQRLDVFDPDRTVFENVAATAP
EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
QAPPVRIRAQLARLLFRGADADVPAAVLSGGERLRAALAMLLLAEPAPKLLLLDEPTNNL
CCCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
DLPSLRHLTQALAGFEGALVVVSHDPRFLDEIGVTRRLELTDEGLVPANPAG
CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]