| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54025651
Identifier: 54025651
GI number: 54025651
Start: 3896298
End: 3897233
Strand: Reverse
Name: 54025651
Synonym: nfa36810
Alternate gene names: NA
Gene position: 3897233-3896298 (Counterclockwise)
Preceding gene: 54025652
Following gene: 54025650
Centisome position: 64.72
GC content: 72.97
Gene sequence:
>936_bases ATGTTGAAGTCGTACAAAGATCTGTCCCGGTGGTACGACCCGCTCGAACCCGACACCGCCGCGCCGAGCGGGTCGCCCGC CGATCAGGACCGCCTCGAACCGCTCGACGACGAGGGACCGGCACGGTATCCGCACTACATTCGCGACGAGGATCCCGTCG AGGCGCGGGCGATCACCGAGGTGCCCGCCGACCTGCCGACCCGGCGCGCCGAATTCACCGGCGGCTGGTCGGACTGGGTG GACGCGCCCGCCGCGGTGCGCGCGCCCGGCCCCGACGACGAGTTCCCCGAGCGCGGTGCCGACCTGGTGCGCTTCCCGTG GTCCGACGACGAGGACGACTACGACGACGATCCGTTCCCCGAACCCGCCCCGGCTCGGTCGTTGCGCGAGCATCCGGCCT ACCGCCGCGGTCGCACGGTGATCGTGCTCGTGATCGCGGTGCTGTTGCTGATCGCGGCCGCGGTGGGCGCGATCGTGTTG CTGCGGCTGTCGGCCGACCGGCCCGCCGCCGCACCCGCCACCGCGCCGATGCGGTTCACCGCGGGCAGCGCGCAGGCGGG CATCACCACCGGCTGTCCCACCGAACGCACCGACCGCATCGTGCGCAGCGCCGCGCCGGGCGGCACCACCTCCGGGCCCG ACGCCGTGCTCGGCTTCCAATACGCCTACTACGTCGAACGTTCCGGCGAGCGCGCCAGGCAGTTCGTCGCACCCGCCGCC GCGGTGCCCGCGGCAGCGGTGATCCAGCGGGGGATCGACTCGATCCCCGCGGGCACCACGCACTGCGTGCGGATCGCCGC GCTCGGCGACACCATGTACGCGGTGGAGGTCACCGAGTACCGGCCGGGCGGCGCGCCCGCCACGTACAACAAGCAGATGG TCACCACCGAGGTGATCGACGGCCGGGTGCTCATCGCGGGCATCGCGGCCGGATAA
Upstream 100 bases:
>100_bases GACCCGGTACCACCGACCACAACTACCCGTTCTCCACGAACTGATCGCCGAGAGGTCCGACGATGCGACACCACGCGCCC GGCCCCGCGGGAATGGGGGA
Downstream 100 bases:
>100_bases GGAGAGCTGAGAGCGATGGGAGAGGACTGGAGCCGCTGGCTCGACGAGGCGCCCGACCGGGGCGACCCGCCGAGCCGACA AGCGCGTTCGAAGGCTCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MLKSYKDLSRWYDPLEPDTAAPSGSPADQDRLEPLDDEGPARYPHYIRDEDPVEARAITEVPADLPTRRAEFTGGWSDWV DAPAAVRAPGPDDEFPERGADLVRFPWSDDEDDYDDDPFPEPAPARSLREHPAYRRGRTVIVLVIAVLLLIAAAVGAIVL LRLSADRPAAAPATAPMRFTAGSAQAGITTGCPTERTDRIVRSAAPGGTTSGPDAVLGFQYAYYVERSGERARQFVAPAA AVPAAAVIQRGIDSIPAGTTHCVRIAALGDTMYAVEVTEYRPGGAPATYNKQMVTTEVIDGRVLIAGIAAG
Sequences:
>Translated_311_residues MLKSYKDLSRWYDPLEPDTAAPSGSPADQDRLEPLDDEGPARYPHYIRDEDPVEARAITEVPADLPTRRAEFTGGWSDWV DAPAAVRAPGPDDEFPERGADLVRFPWSDDEDDYDDDPFPEPAPARSLREHPAYRRGRTVIVLVIAVLLLIAAAVGAIVL LRLSADRPAAAPATAPMRFTAGSAQAGITTGCPTERTDRIVRSAAPGGTTSGPDAVLGFQYAYYVERSGERARQFVAPAA AVPAAAVIQRGIDSIPAGTTHCVRIAALGDTMYAVEVTEYRPGGAPATYNKQMVTTEVIDGRVLIAGIAAG >Mature_311_residues MLKSYKDLSRWYDPLEPDTAAPSGSPADQDRLEPLDDEGPARYPHYIRDEDPVEARAITEVPADLPTRRAEFTGGWSDWV DAPAAVRAPGPDDEFPERGADLVRFPWSDDEDDYDDDPFPEPAPARSLREHPAYRRGRTVIVLVIAVLLLIAAAVGAIVL LRLSADRPAAAPATAPMRFTAGSAQAGITTGCPTERTDRIVRSAAPGGTTSGPDAVLGFQYAYYVERSGERARQFVAPAA AVPAAAVIQRGIDSIPAGTTHCVRIAALGDTMYAVEVTEYRPGGAPATYNKQMVTTEVIDGRVLIAGIAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33254; Mature: 33254
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSYKDLSRWYDPLEPDTAAPSGSPADQDRLEPLDDEGPARYPHYIRDEDPVEARAITE CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH VPADLPTRRAEFTGGWSDWVDAPAAVRAPGPDDEFPERGADLVRFPWSDDEDDYDDDPFP CCCCCCCCHHHCCCCHHHHHCCCCEEECCCCCCCCHHCCCCEEECCCCCCCCCCCCCCCC EPAPARSLREHPAYRRGRTVIVLVIAVLLLIAAAVGAIVLLRLSADRPAAAPATAPMRFT CCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCCCCCCCCEEEE AGSAQAGITTGCPTERTDRIVRSAAPGGTTSGPDAVLGFQYAYYVERSGERARQFVAPAA CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEEEEHHCHHHHHHHHCCHH AVPAAAVIQRGIDSIPAGTTHCVRIAALGDTMYAVEVTEYRPGGAPATYNKQMVTTEVID HHHHHHHHHHHHHCCCCCCHHEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEECCC GRVLIAGIAAG CEEEEEEECCC >Mature Secondary Structure MLKSYKDLSRWYDPLEPDTAAPSGSPADQDRLEPLDDEGPARYPHYIRDEDPVEARAITE CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH VPADLPTRRAEFTGGWSDWVDAPAAVRAPGPDDEFPERGADLVRFPWSDDEDDYDDDPFP CCCCCCCCHHHCCCCHHHHHCCCCEEECCCCCCCCHHCCCCEEECCCCCCCCCCCCCCCC EPAPARSLREHPAYRRGRTVIVLVIAVLLLIAAAVGAIVLLRLSADRPAAAPATAPMRFT CCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCCCCCCCCEEEE AGSAQAGITTGCPTERTDRIVRSAAPGGTTSGPDAVLGFQYAYYVERSGERARQFVAPAA CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEEEEHHCHHHHHHHHCCHH AVPAAAVIQRGIDSIPAGTTHCVRIAALGDTMYAVEVTEYRPGGAPATYNKQMVTTEVID HHHHHHHHHHHHHCCCCCCHHEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEECCC GRVLIAGIAAG CEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA