Click here to switch to the map view.

The map label for this gene is yomI [H]

Identifier: 54025640

GI number: 54025640

Start: 3885548

End: 3887215

Strand: Reverse

Name: yomI [H]

Synonym: nfa36700

Alternate gene names: 54025640

Gene position: 3887215-3885548 (Counterclockwise)

Preceding gene: 54025641

Following gene: 54025639

Centisome position: 64.56

GC content: 74.52

Gene sequence:

>1668_bases
GTGGTCGCGGTGAGCGCCCGCGGCGTGCTGTGGTTCGCGCTCGGGACCGTCGTCGGCCTCATCGCGTTGGTCCTGGTGGT
GGTGTTGCCCTCGGTCGAGGACCCGTGCGAGGGTTCCTCGCTGCTGGGCGGTGGGCCGAGCGCGCTGCCGCCGCTGGGCG
GCTACCCGGCGGGCGACCCGCGCGCCGCCGATCCGTCGCCCGCGCAGGCGAACCCGATCCTGACCGCCACGCCGTCACTG
GCCGCAGGGGCGGGCCCGATCCGGCGCACGCTGCCGATGGCGGTCGGCACCTTCACCATCTCCGACGTCTTCGGCTCCCG
CGGCGGCGGGCACAAGGGCGTGGACATGGCCGCCGCCGACGGCACCCCGATCTTCTCGGTGTCCGACGGCCGGGTGGTCG
CCGCCGGGCCCGCCTCCGGTTTCGGCAACTGGATCGTGGTGGACTCGGTCGATGTCAACGGCCGCTCGTATTCGGCGGTG
TACGGGCACATGTGGGATCACGGTGTGCTGGTGCGGGCCGGTGACACGGTGCGCGCGGGACAGCAGATCGGGGCCGTCGG
CTCGGCCGGGGAATCCAGCGGTCCGCACCTGCATTTCGAGATCGTGCCGGGCGGCCGCTTCACCGGCGGGCGCCAGATCG
ACCCGATGCCCTGGCTCGACGGCGCGCCGACACCGGATCTGGGCGGCGCGCAGTGGTACTCGGCCGACCCGCGGTGCAGC
CTCGGCTTCGGCAGCCCGGGCGGCGCGCTCGCGCCCGGCAAGGTGCCGCCGGAACTCGAGGTCTGGTACCGCCGCGCCGG
GTCGCTGTGCCCGGAGATCACCCCGTCGCTGCTGGCGGCGCAGGGCAGGCAGGAATCCGGCTTCCGGCGCGGCGCCACCT
CGCCCGCGGGCGCGCAGGGCCTGGCGCAGTTCCTGCCCGGCACCGCCGCCTCCGCGAGCCCGATCGACGGCAGGCCCTAC
GTTCTCGACGCCGACGGCAACGGTGCGGCCAGCGTGTGGGACGACGGCGACGCCATCATGGGCCAGGGCCGGTACATGTG
CTCCCTCGCCGCCAAGATCAGGCAGTGGCAGGCCGAGGGCCGGGTGCAGGGCGATGTCACCGCGCTCGCGCTCGCGGCCT
ACAACGCCGGTGAAGGGGCGGTGCTGGCCAGCGGCGGTATGCCGAACCAGTATGCGGCGCACTACTCCGAGACCCGGCCG
TACGTGGCGAACATCCTCGCGATGGAACCGCAGTACCGTGCACCGGGCTCGCTGGGCCGGTTCACCCCGGAGGAGGGCGA
GCGCGGCCCGCAGATCCTCGAGGCCGCCCACGAGTGGCTCGGCACGCCGTACGTGTGGGGCGGCGGTGGTCCGCAGGGGC
CGAGCAACGGCGGGATGGACGGGCCTGGCCTGACCGCCGCGGCGGTGTTCGCGGCGTCCGGCGGCGAGGTGATGTTGCCG
CGCACGGCCGAACAGCAGTGGGAGTTCGGCGAGGAGGTGTCGATGGGCAAGGCACAGCCCGGTGATCTGGTGTTCAGCGA
CTTCGGGCCGCGCGGGCCCGCGCGGGTCGGGGTGTACGCGGGGGAGGGGCGGATGATCCAGTCCGCGCCTGCCGGACAGG
ACAGCCGCGCCGGTGGGGTGAGCGAGATCCCGGTGCCCGGCGACGCGCGGGTGCGGAGGGTGCTGTGA

Upstream 100 bases:

>100_bases
GCCGCGGAGATGAACCGCACCCTGGCCGACACCCTCAACGAAGCCCGTCGGCGCACGTGACCGGAGTCCTCGCGTCGGTG
TCCGACGCCTGCCGCCGGAA

Downstream 100 bases:

>100_bases
GCGGACACGGCAGCGCAGTGGCGGCGTCCGGGCGACCGCGGGGCCCGTCACGGCAGTTAGCCTGGAAGCACAGGACACGC
GCGAAACTGGTGGTGGTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MVAVSARGVLWFALGTVVGLIALVLVVVLPSVEDPCEGSSLLGGGPSALPPLGGYPAGDPRAADPSPAQANPILTATPSL
AAGAGPIRRTLPMAVGTFTISDVFGSRGGGHKGVDMAAADGTPIFSVSDGRVVAAGPASGFGNWIVVDSVDVNGRSYSAV
YGHMWDHGVLVRAGDTVRAGQQIGAVGSAGESSGPHLHFEIVPGGRFTGGRQIDPMPWLDGAPTPDLGGAQWYSADPRCS
LGFGSPGGALAPGKVPPELEVWYRRAGSLCPEITPSLLAAQGRQESGFRRGATSPAGAQGLAQFLPGTAASASPIDGRPY
VLDADGNGAASVWDDGDAIMGQGRYMCSLAAKIRQWQAEGRVQGDVTALALAAYNAGEGAVLASGGMPNQYAAHYSETRP
YVANILAMEPQYRAPGSLGRFTPEEGERGPQILEAAHEWLGTPYVWGGGGPQGPSNGGMDGPGLTAAAVFAASGGEVMLP
RTAEQQWEFGEEVSMGKAQPGDLVFSDFGPRGPARVGVYAGEGRMIQSAPAGQDSRAGGVSEIPVPGDARVRRVL

Sequences:

>Translated_555_residues
MVAVSARGVLWFALGTVVGLIALVLVVVLPSVEDPCEGSSLLGGGPSALPPLGGYPAGDPRAADPSPAQANPILTATPSL
AAGAGPIRRTLPMAVGTFTISDVFGSRGGGHKGVDMAAADGTPIFSVSDGRVVAAGPASGFGNWIVVDSVDVNGRSYSAV
YGHMWDHGVLVRAGDTVRAGQQIGAVGSAGESSGPHLHFEIVPGGRFTGGRQIDPMPWLDGAPTPDLGGAQWYSADPRCS
LGFGSPGGALAPGKVPPELEVWYRRAGSLCPEITPSLLAAQGRQESGFRRGATSPAGAQGLAQFLPGTAASASPIDGRPY
VLDADGNGAASVWDDGDAIMGQGRYMCSLAAKIRQWQAEGRVQGDVTALALAAYNAGEGAVLASGGMPNQYAAHYSETRP
YVANILAMEPQYRAPGSLGRFTPEEGERGPQILEAAHEWLGTPYVWGGGGPQGPSNGGMDGPGLTAAAVFAASGGEVMLP
RTAEQQWEFGEEVSMGKAQPGDLVFSDFGPRGPARVGVYAGEGRMIQSAPAGQDSRAGGVSEIPVPGDARVRRVL
>Mature_555_residues
MVAVSARGVLWFALGTVVGLIALVLVVVLPSVEDPCEGSSLLGGGPSALPPLGGYPAGDPRAADPSPAQANPILTATPSL
AAGAGPIRRTLPMAVGTFTISDVFGSRGGGHKGVDMAAADGTPIFSVSDGRVVAAGPASGFGNWIVVDSVDVNGRSYSAV
YGHMWDHGVLVRAGDTVRAGQQIGAVGSAGESSGPHLHFEIVPGGRFTGGRQIDPMPWLDGAPTPDLGGAQWYSADPRCS
LGFGSPGGALAPGKVPPELEVWYRRAGSLCPEITPSLLAAQGRQESGFRRGATSPAGAQGLAQFLPGTAASASPIDGRPY
VLDADGNGAASVWDDGDAIMGQGRYMCSLAAKIRQWQAEGRVQGDVTALALAAYNAGEGAVLASGGMPNQYAAHYSETRP
YVANILAMEPQYRAPGSLGRFTPEEGERGPQILEAAHEWLGTPYVWGGGGPQGPSNGGMDGPGLTAAAVFAASGGEVMLP
RTAEQQWEFGEEVSMGKAQPGDLVFSDFGPRGPARVGVYAGEGRMIQSAPAGQDSRAGGVSEIPVPGDARVRRVL

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Attached To The Inner Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=121, Percent_Identity=39.6694214876033, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=37.5, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87082297, Length=108, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87082174, Length=117, Percent_Identity=34.1880341880342, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 56525; Mature: 56525

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVSARGVLWFALGTVVGLIALVLVVVLPSVEDPCEGSSLLGGGPSALPPLGGYPAGDP
CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RAADPSPAQANPILTATPSLAAGAGPIRRTLPMAVGTFTISDVFGSRGGGHKGVDMAAAD
CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHEEEHHHHHCCCCCCCCCCEEEECC
GTPIFSVSDGRVVAAGPASGFGNWIVVDSVDVNGRSYSAVYGHMWDHGVLVRAGDTVRAG
CCEEEEECCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCHHCC
QQIGAVGSAGESSGPHLHFEIVPGGRFTGGRQIDPMPWLDGAPTPDLGGAQWYSADPRCS
HHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
LGFGSPGGALAPGKVPPELEVWYRRAGSLCPEITPSLLAAQGRQESGFRRGATSPAGAQG
ECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
LAQFLPGTAASASPIDGRPYVLDADGNGAASVWDDGDAIMGQGRYMCSLAAKIRQWQAEG
HHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHCC
RVQGDVTALALAAYNAGEGAVLASGGMPNQYAAHYSETRPYVANILAMEPQYRAPGSLGR
CCCCCCEEEEEEEECCCCCCEEECCCCCCHHHHHHHCCCCHHHHHEEECCCCCCCCCCCC
FTPEEGERGPQILEAAHEWLGTPYVWGGGGPQGPSNGGMDGPGLTAAAVFAASGGEVMLP
CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHEEEEEECCCCCEEEC
RTAEQQWEFGEEVSMGKAQPGDLVFSDFGPRGPARVGVYAGEGRMIQSAPAGQDSRAGGV
CCCHHHHCCCCHHCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCC
SEIPVPGDARVRRVL
CCCCCCCCHHHHCCC
>Mature Secondary Structure
MVAVSARGVLWFALGTVVGLIALVLVVVLPSVEDPCEGSSLLGGGPSALPPLGGYPAGDP
CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RAADPSPAQANPILTATPSLAAGAGPIRRTLPMAVGTFTISDVFGSRGGGHKGVDMAAAD
CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHEEEHHHHHCCCCCCCCCCEEEECC
GTPIFSVSDGRVVAAGPASGFGNWIVVDSVDVNGRSYSAVYGHMWDHGVLVRAGDTVRAG
CCEEEEECCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCHHCC
QQIGAVGSAGESSGPHLHFEIVPGGRFTGGRQIDPMPWLDGAPTPDLGGAQWYSADPRCS
HHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
LGFGSPGGALAPGKVPPELEVWYRRAGSLCPEITPSLLAAQGRQESGFRRGATSPAGAQG
ECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
LAQFLPGTAASASPIDGRPYVLDADGNGAASVWDDGDAIMGQGRYMCSLAAKIRQWQAEG
HHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHCC
RVQGDVTALALAAYNAGEGAVLASGGMPNQYAAHYSETRPYVANILAMEPQYRAPGSLGR
CCCCCCEEEEEEEECCCCCCEEECCCCCCHHHHHHHCCCCHHHHHEEECCCCCCCCCCCC
FTPEEGERGPQILEAAHEWLGTPYVWGGGGPQGPSNGGMDGPGLTAAAVFAASGGEVMLP
CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHEEEEEECCCCCEEEC
RTAEQQWEFGEEVSMGKAQPGDLVFSDFGPRGPARVGVYAGEGRMIQSAPAGQDSRAGGV
CCCHHHHCCCCHHCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCC
SEIPVPGDARVRRVL
CCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]