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The map label for this gene is 54025638

Identifier: 54025638

GI number: 54025638

Start: 3883040

End: 3884893

Strand: Reverse

Name: 54025638

Synonym: nfa36680

Alternate gene names: NA

Gene position: 3884893-3883040 (Counterclockwise)

Preceding gene: 54025639

Following gene: 54025637

Centisome position: 64.52

GC content: 68.45

Gene sequence:

>1854_bases
ATGGCGAAGAAGAAAAAGGTCACGGATCCGGCGGTACCCGGACCCGATCTCAGCCTGTACGCCGTCTACGCCGGCTTCGC
GTTGTTCGGCCTGCTGCTGATCGCCCTGCACTTGGGCAACCAGATGATGAATCCGCCGCAGCAGTTGCCGGTCAACCCGA
TCGAGGTGGTCGCGGGCATGGCCCGCGGCAAGTACACCTGGCCCACCGGCTCGACGGTCATCGTGCTGCTGGTGTTCGCG
TGCGTGGCCGGTGTGCTGGTGCTGCGCAGGCAGATGGCCAAACGCAAGTCGGTGGGTGCGCTGCCGGTGGACGAGAAGGC
GCACTACATGGGCACCGGCGGGGCGATCCGCGCGCTCACCGAGGCGGGGGTGCGGGAGAAGGCCGAGCAGCTGGGTATGA
AGCTCGGTTACAACGACGCACCGGGCGTGCCGATCGGGATCAGCGTGGCCGACGGCGTGATGCTCTACGGCTCCTACGAG
GATCTGCACCTCGACATCTGGGGCCCCCGCCAGGGCAAGTCCACGTCCCGGGTGATCCCGGCGATCCTGGCGGCGATCGG
CCCGGTGCTGTCCACCTCGAACAAGCGCGACGTGGTCGACGCCACCCGCGACGTGCGCGAGGCCAAGGGCAGCCCCACCT
TCGTGTTCGATCCGCAGGGTGTGGCCGACGAGAGCCCGAGCTGGTACTGGAATCCGCTCGACTGGGTGGACGCCCACCAC
GAGGGCTGCGAGATGCGGGCGCAACGCCTGGCCGGGCACTTCGCCGACGCCGACAACGGCGGGGACTCCAAGAAGGACGA
GTTCTTCGACCCCGAGGCCGAAGACCTGCTCGCCGCGCTGTTCCTGGCCGCGGCGCTCGGCCGCGAACCGATCGTGAAGG
TGTGGGAATGGGTCACCAACCCCGTCGACACCGAACCGATCGAGTTGCTGCGCAACGCCGGTCACGACCTGATGGCCTCC
GGCCTGGCCATGCAGTACAACGCCGATCCGCGCACCCGCAGCGGCATCTTCGGCACCGCCAAGAAGATGGTGCGCTGCCT
GCAACTCACCAACGTGCACAGCTGGATCCTGCCCGGCACGGACCCGCAGACCGGTCTGCCGCGTAGGCAGTTCGACGAGC
TGGAGTTCATCGAGCGCAACGGCACCCTGTACTGCCTGTCGCTGGAGGGCCGCGGCTCGGCCGCGCCGCTGGTGAGCGCC
CTGACCGAGGCCGTGATCGACGTGGCCATGCGCAAGGCCTCCCGCTCCCGCGGCGGTCGTCTGCCGATCCCGCTGCTCGC
CGTGCTCGACGAGGCCGCCAACGTGGTGCGCTGGAAGGACCTGCCCAAGCAGTACAGCCACTTCGGCTCCCGCGGCATCG
TGGTGATGACGGTGCTGCAGTCCTGGGCGCAGGGCGCGCGCTGCTGGGGTGACGCGGGCATGCTCGCGCTGTGGTCGGCG
GCCAACATCAAGGTGCTCGGCAGCGGCGTGGACGATATGAACTTCCTGCGCGACCGCTCGGAGGCCATCGGTGAATACGA
TTCGATCTCGGCGTCGGTCTCCGAATCCAAAGGCGGCAAGAGCTATTCGCGGTCGCTGTCGTCGTCGAAGACCTTCAGTG
TCAACGCGCTGACCACCCTGCCGCGCGGTCGCGCCATCGTGTTCACCTCCGGCCAGCCCGCGGTGCTGGTGCGCACCGTG
CCGTGGTGGGAGGGCGAGTACGCCGCCGAGGTGAAGAAGTCCATCGCGCAACACGATCCGCAGCGCAAGACCGAGATCGG
CGACGTGATCGGCTCGCCCGCGCTGGTGAAGAAGGACGTCCCGCCGCCGCCCGACCTGCGCAAGGGCGATGTCGAGGAGG
TCCGGCCCCTGTGA

Upstream 100 bases:

>100_bases
ACCGTCATCGCCACGGTGGTGCGCACCGCCGAGGGCTGGCGGCTCGACGCGTTCGGCTGAGCACAGACATTCCCCCGCAG
GGCGATTCGAGGAGGCAGAC

Downstream 100 bases:

>100_bases
ACCGACCAACGAAAGGCATGGTCTCCGTGGACATGACGGTACTCAGTGAGGAGCGTCGATGAACCAGCACCTGCCCGGGC
CGCCGCGGCCGGAGAAGACG

Product: hypothetical protein

Products: NA

Alternate protein names: Conjugative Transfer Gene Complex Protein; TraG-Family Protein; Conjugal Transfer Protein; Type IV Secretory Pathway VirD4 Component; Type IV Secretory Pathway VirD4 Components-Like; Type IV Secretion Protein; TraG Family Bacterial Conjugation Protein; Conjugative Transfer Gene Complex Protein-Like Protein; Type IV Secretory Pathway VirD4 Components-Like Protein; TraG-Family Bacterial Conjugation Protein; TraG Family Protein; TRAG Family Protein; TraK Protein

Number of amino acids: Translated: 617; Mature: 616

Protein sequence:

>617_residues
MAKKKKVTDPAVPGPDLSLYAVYAGFALFGLLLIALHLGNQMMNPPQQLPVNPIEVVAGMARGKYTWPTGSTVIVLLVFA
CVAGVLVLRRQMAKRKSVGALPVDEKAHYMGTGGAIRALTEAGVREKAEQLGMKLGYNDAPGVPIGISVADGVMLYGSYE
DLHLDIWGPRQGKSTSRVIPAILAAIGPVLSTSNKRDVVDATRDVREAKGSPTFVFDPQGVADESPSWYWNPLDWVDAHH
EGCEMRAQRLAGHFADADNGGDSKKDEFFDPEAEDLLAALFLAAALGREPIVKVWEWVTNPVDTEPIELLRNAGHDLMAS
GLAMQYNADPRTRSGIFGTAKKMVRCLQLTNVHSWILPGTDPQTGLPRRQFDELEFIERNGTLYCLSLEGRGSAAPLVSA
LTEAVIDVAMRKASRSRGGRLPIPLLAVLDEAANVVRWKDLPKQYSHFGSRGIVVMTVLQSWAQGARCWGDAGMLALWSA
ANIKVLGSGVDDMNFLRDRSEAIGEYDSISASVSESKGGKSYSRSLSSSKTFSVNALTTLPRGRAIVFTSGQPAVLVRTV
PWWEGEYAAEVKKSIAQHDPQRKTEIGDVIGSPALVKKDVPPPPDLRKGDVEEVRPL

Sequences:

>Translated_617_residues
MAKKKKVTDPAVPGPDLSLYAVYAGFALFGLLLIALHLGNQMMNPPQQLPVNPIEVVAGMARGKYTWPTGSTVIVLLVFA
CVAGVLVLRRQMAKRKSVGALPVDEKAHYMGTGGAIRALTEAGVREKAEQLGMKLGYNDAPGVPIGISVADGVMLYGSYE
DLHLDIWGPRQGKSTSRVIPAILAAIGPVLSTSNKRDVVDATRDVREAKGSPTFVFDPQGVADESPSWYWNPLDWVDAHH
EGCEMRAQRLAGHFADADNGGDSKKDEFFDPEAEDLLAALFLAAALGREPIVKVWEWVTNPVDTEPIELLRNAGHDLMAS
GLAMQYNADPRTRSGIFGTAKKMVRCLQLTNVHSWILPGTDPQTGLPRRQFDELEFIERNGTLYCLSLEGRGSAAPLVSA
LTEAVIDVAMRKASRSRGGRLPIPLLAVLDEAANVVRWKDLPKQYSHFGSRGIVVMTVLQSWAQGARCWGDAGMLALWSA
ANIKVLGSGVDDMNFLRDRSEAIGEYDSISASVSESKGGKSYSRSLSSSKTFSVNALTTLPRGRAIVFTSGQPAVLVRTV
PWWEGEYAAEVKKSIAQHDPQRKTEIGDVIGSPALVKKDVPPPPDLRKGDVEEVRPL
>Mature_616_residues
AKKKKVTDPAVPGPDLSLYAVYAGFALFGLLLIALHLGNQMMNPPQQLPVNPIEVVAGMARGKYTWPTGSTVIVLLVFAC
VAGVLVLRRQMAKRKSVGALPVDEKAHYMGTGGAIRALTEAGVREKAEQLGMKLGYNDAPGVPIGISVADGVMLYGSYED
LHLDIWGPRQGKSTSRVIPAILAAIGPVLSTSNKRDVVDATRDVREAKGSPTFVFDPQGVADESPSWYWNPLDWVDAHHE
GCEMRAQRLAGHFADADNGGDSKKDEFFDPEAEDLLAALFLAAALGREPIVKVWEWVTNPVDTEPIELLRNAGHDLMASG
LAMQYNADPRTRSGIFGTAKKMVRCLQLTNVHSWILPGTDPQTGLPRRQFDELEFIERNGTLYCLSLEGRGSAAPLVSAL
TEAVIDVAMRKASRSRGGRLPIPLLAVLDEAANVVRWKDLPKQYSHFGSRGIVVMTVLQSWAQGARCWGDAGMLALWSAA
NIKVLGSGVDDMNFLRDRSEAIGEYDSISASVSESKGGKSYSRSLSSSKTFSVNALTTLPRGRAIVFTSGQPAVLVRTVP
WWEGEYAAEVKKSIAQHDPQRKTEIGDVIGSPALVKKDVPPPPDLRKGDVEEVRPL

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66853; Mature: 66722

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKKVTDPAVPGPDLSLYAVYAGFALFGLLLIALHLGNQMMNPPQQLPVNPIEVVAGM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHH
ARGKYTWPTGSTVIVLLVFACVAGVLVLRRQMAKRKSVGALPVDEKAHYMGTGGAIRALT
HCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHH
EAGVREKAEQLGMKLGYNDAPGVPIGISVADGVMLYGSYEDLHLDIWGPRQGKSTSRVIP
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCHHHHHH
AILAAIGPVLSTSNKRDVVDATRDVREAKGSPTFVFDPQGVADESPSWYWNPLDWVDAHH
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCC
EGCEMRAQRLAGHFADADNGGDSKKDEFFDPEAEDLLAALFLAAALGREPIVKVWEWVTN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PVDTEPIELLRNAGHDLMASGLAMQYNADPRTRSGIFGTAKKMVRCLQLTNVHSWILPGT
CCCCCHHHHHHHCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC
DPQTGLPRRQFDELEFIERNGTLYCLSLEGRGSAAPLVSALTEAVIDVAMRKASRSRGGR
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPIPLLAVLDEAANVVRWKDLPKQYSHFGSRGIVVMTVLQSWAQGARCWGDAGMLALWSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
ANIKVLGSGVDDMNFLRDRSEAIGEYDSISASVSESKGGKSYSRSLSSSKTFSVNALTTL
CCEEEEECCCCHHHHHHHHHHHCCCHHHCCCHHHHCCCCHHHHHHCCCCCEEEEEEEEEC
PRGRAIVFTSGQPAVLVRTVPWWEGEYAAEVKKSIAQHDPQRKTEIGDVIGSPALVKKDV
CCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCC
PPPPDLRKGDVEEVRPL
CCCCCCCCCCHHHCCCC
>Mature Secondary Structure 
AKKKKVTDPAVPGPDLSLYAVYAGFALFGLLLIALHLGNQMMNPPQQLPVNPIEVVAGM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHH
ARGKYTWPTGSTVIVLLVFACVAGVLVLRRQMAKRKSVGALPVDEKAHYMGTGGAIRALT
HCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHH
EAGVREKAEQLGMKLGYNDAPGVPIGISVADGVMLYGSYEDLHLDIWGPRQGKSTSRVIP
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCHHHHHH
AILAAIGPVLSTSNKRDVVDATRDVREAKGSPTFVFDPQGVADESPSWYWNPLDWVDAHH
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCC
EGCEMRAQRLAGHFADADNGGDSKKDEFFDPEAEDLLAALFLAAALGREPIVKVWEWVTN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PVDTEPIELLRNAGHDLMASGLAMQYNADPRTRSGIFGTAKKMVRCLQLTNVHSWILPGT
CCCCCHHHHHHHCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC
DPQTGLPRRQFDELEFIERNGTLYCLSLEGRGSAAPLVSALTEAVIDVAMRKASRSRGGR
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPIPLLAVLDEAANVVRWKDLPKQYSHFGSRGIVVMTVLQSWAQGARCWGDAGMLALWSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
ANIKVLGSGVDDMNFLRDRSEAIGEYDSISASVSESKGGKSYSRSLSSSKTFSVNALTTL
CCEEEEECCCCHHHHHHHHHHHCCCHHHCCCHHHHCCCCHHHHHHCCCCCEEEEEEEEEC
PRGRAIVFTSGQPAVLVRTVPWWEGEYAAEVKKSIAQHDPQRKTEIGDVIGSPALVKKDV
CCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCC
PPPPDLRKGDVEEVRPL
CCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA