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The map label for this gene is ycaJ [C]

Identifier: 54025615

GI number: 54025615

Start: 3857715

End: 3859070

Strand: Reverse

Name: ycaJ [C]

Synonym: nfa36450

Alternate gene names: 54025615

Gene position: 3859070-3857715 (Counterclockwise)

Preceding gene: 54025617

Following gene: 54025614

Centisome position: 64.09

GC content: 72.27

Gene sequence:

>1356_bases
ATGAGCGACGGGCTTTTCGACGTGCCGAGCGAGGCCGCGCCGGACCCGGGAATCGACGGCGCGGGCGTCGACTTCCGCGG
TCCGGGCGACCAGGCTCCGCTGGCGGTGCGGATGCGGCCGCGGTCGTTGGAGGAGGTGGTCGGTCAGCAGCATCTGCTGG
GCCCGGGGTCGCCGCTGCGTCGGCTCATCGAGGGCTCGGGCGCGGCTTCGGTGCTGCTGTTCGGGCCGCCGGGTACCGGC
AAGACGACGCTGGCCTCCTTGATCTCGCAGGCGACCGGGCGCCGGTTCGAGGCGCTCTCGGCGTTGTCGGCGGGGGTGAA
AGAGGTGCGCGCGGTCATCGACCTGGCGCGCAGGCGACTGACCGCGGGCGAGCGCACCGTGTTGTTCATCGACGAGGTGC
ACCGCTTCTCCAAGACGCAACAGGACGCGTTGCTGGCGGCGGTGGAGAACCGCATCGTGCTGCTCGTCGGCGCCACCACC
GAGAACCCGTCGTTCTCGGTGGTCTCGCCGTTGCTGTCGCGGTCGCTGGTGTTGCAGCTGCGCTCGCTCACCGACGCCGA
CATCCGGACCGTGCTCGATCGTGCGCTGGCCGACCCGCGCGGCTTCGGCGGCGCCTATCAGGTCACCGATGCCGCGCTCG
ATCACATCGTGCGCATCGCGGGCGGGGACGCGCGCCGGGCGCTGACCGCGCTGGAGGCCTCGGCGGAGTCCTCGCTCGAC
GGCGTCGTCGACCTCGATCTGGTCGAGGCCAGCGTGGACCGGGCCGCCGTGCGCTACGACCGCGCGGGCGACCAGCACTA
CGACGTGGTGAGCGCATTCATCAAGTCCATCCGCGGCTCCGACGTCGACGCCGCCCTGCACTACCTGGCCAGGATGCTCA
GCGCGGGGGAGGACCCGCGCTTCATCGCCCGCCGCCTGGTGATCTCGGCCAGCGAGGACATCGGCATGGCCGATCCGAGC
GCATTGCAGACGGCGGTGGCCGCCGCCCACGTGGTGCAGTTGATCGGCATGCCCGAGGCCCAGCTGACGCTGACGCACGC
CACCATCCACCTGGCCACCGCGCCGAAGTCGGGTGCGGTGCCGGCCGCGCTGGGCGCCGCCATGGCCGACATCTCCGCGG
GCAAGGCGGGCGCGGTGCCGCCGCACCTGCGCGACGGCCACTACGCGGGGGCGGCGAAGCTGGGCAACGCGCAGGGCTAC
AAGTACCCGCACGACGATCCGGACGGGGTGCTGGCCCAGCAGTACCCGCCCGACGAACTCGTCGGCGCCGACTACTACCG
GCCGACCGACCACGGCTACGAGCGCGAGATCGGTACGCGGGTGGAGAAATTGCGGCGGATCGTGCGCGGCCGGTAG

Upstream 100 bases:

>100_bases
CGGCACAGATCCCAGCCGATGCCGTCCGCGCTCGCAAATCGGGCGGTGTGCGGGGAGGTTGCGCACGGTGCTGTCGGCGC
GCGCCGGTACGGTCGAGAAC

Downstream 100 bases:

>100_bases
CGGCGCCGCGGCGGCCGTCCGCGCCCGGGCCGGGCGATGAAAAAGCAGGTGCGCGGCCCCGGTAGGCTGGATACCTGTGC
AGACCCACGAGATTCGACGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAASVLLFGPPGTG
KTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATT
ENPSFSVVSPLLSRSLVLQLRSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLD
GVVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGEDPRFIARRLVISASEDIGMADPS
ALQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGY
KYPHDDPDGVLAQQYPPDELVGADYYRPTDHGYEREIGTRVEKLRRIVRGR

Sequences:

>Translated_451_residues
MSDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAASVLLFGPPGTG
KTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATT
ENPSFSVVSPLLSRSLVLQLRSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLD
GVVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGEDPRFIARRLVISASEDIGMADPS
ALQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGY
KYPHDDPDGVLAQQYPPDELVGADYYRPTDHGYEREIGTRVEKLRRIVRGR
>Mature_450_residues
SDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAASVLLFGPPGTGK
TTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATTE
NPSFSVVSPLLSRSLVLQLRSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLDG
VVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGEDPRFIARRLVISASEDIGMADPSA
LQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGYK
YPHDDPDGVLAQQYPPDELVGADYYRPTDHGYEREIGTRVEKLRRIVRGR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=39.4077448747153, Blast_Score=278, Evalue=1e-74,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=36.2186788154898, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI31563534, Length=290, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=7e-13,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=44.5238095238095, Blast_Score=335, Evalue=3e-93,
Organism=Escherichia coli, GI1788167, Length=246, Percent_Identity=30.4878048780488, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=38.4433962264151, Blast_Score=274, Evalue=2e-74,
Organism=Saccharomyces cerevisiae, GI6324039, Length=282, Percent_Identity=25.886524822695, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI18859927, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47635; Mature: 47504

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCHHHCCCCCHHHH
RLIEGSGAASVLLFGPPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRL
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSPLLSRSLVLQL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
RSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLD
HHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
GVVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGEDPR
CCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
FIARRLVISASEDIGMADPSALQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSGAV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEEECCCCCCC
PAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGYKYPHDDPDGVLAQQYPPDEL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
VGADYYRPTDHGYEREIGTRVEKLRRIVRGR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCHHHCCCCCHHHH
RLIEGSGAASVLLFGPPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRL
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSPLLSRSLVLQL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
RSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLD
HHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
GVVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGEDPR
CCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
FIARRLVISASEDIGMADPSALQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSGAV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEEECCCCCCC
PAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGYKYPHDDPDGVLAQQYPPDEL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
VGADYYRPTDHGYEREIGTRVEKLRRIVRGR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]