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The map label for this gene is yqgF [C]

Identifier: 54025613

GI number: 54025613

Start: 3854430

End: 3854972

Strand: Reverse

Name: yqgF [C]

Synonym: nfa36430

Alternate gene names: 54025613

Gene position: 3854972-3854430 (Counterclockwise)

Preceding gene: 54025614

Following gene: 54025612

Centisome position: 64.02

GC content: 67.96

Gene sequence:

>543_bases
ATGGACGCGCAGGAGCGTTCCGAGCGCCCCGACCCCGCCACCGACCCGGGGCGGGGGCGACGCCTCGGCATCGATGTCGG
AAGTGTCCGCATCGGGGTCGCCTCGAGCGACCCGGACGGCATCCTCGCCACCCCGGTGGAGACCGTGCCGCGCGCGAAGA
AGGTTCCGCGCGGCACCGTCTCCCCCGACATCGCCAGAATTGCCGAAATTGTGCGGGAGTACGAGGCCGTCGAGGTCATT
GTCGGCCTGCCCAGGACGTTACGCGGGGAGAAGGGCAGCGCCGCGACCGCGGCGATCGCGTTCGCCGAAAGATTGCGGCG
CGAAATCCCCGACGTGGCGATACGCCTTTCCGACGAACGTTTGACTACGGTGTCTGCTGCACGTGCTTTGCGGGACAGTG
GAGTTCGCGCGCGTGGCCAGCGGCAGGTGATCGATCAGGCGGCGGCCGTATCGATCCTGCAGGGATGGTTGGACGAACGG
AGTGCGGTGATGAGGTCGGTCGGGGAAGCGGAGTCGGCGACGTCGTCCGGAGATGATGCATGA

Upstream 100 bases:

>100_bases
GCGGCAAACCCGAGATGGCGCAGGGCGCCGGATCGGATCCGTCCGGTATTCCGGCGGGGCTGGCCGCCGTGCGCGCCCGG
GTGGCCGAAATCGCCGGCTG

Downstream 100 bases:

>100_bases
CGGACCGGTGGACACGAGCGGAGGAGCGGTACCGGCAACGGGAAGCCGACCGCAGGTACCGGCGTGACGACGCGGCGTGG
GAGCGCAGCGCCCGCTCGGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MDAQERSERPDPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVI
VGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDER
SAVMRSVGEAESATSSGDDA

Sequences:

>Translated_180_residues
MDAQERSERPDPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVI
VGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDER
SAVMRSVGEAESATSSGDDA
>Mature_180_residues
MDAQERSERPDPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVI
VGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDER
SAVMRSVGEAESATSSGDDA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NOCFA (Q5YTK0)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119855.1
- ProteinModelPortal:   Q5YTK0
- SMR:   Q5YTK0
- GeneID:   3107297
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa36430
- NMPDR:   fig|247156.1.peg.3556
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   NFAR247156:NFA36430-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 19135; Mature: 19135

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAQERSERPDPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTV
CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEECCHHHHHHHHCCCCCCC
SPDIARIAEIVREYEAVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDER
CHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCH
LTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDERSAVMRSVGEAESATSSGDDA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDAQERSERPDPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTV
CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEECCHHHHHHHHCCCCCCC
SPDIARIAEIVREYEAVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDER
CHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCH
LTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDERSAVMRSVGEAESATSSGDDA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA