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The map label for this gene is pyrF [H]

Identifier: 54025588

GI number: 54025588

Start: 3829281

End: 3830126

Strand: Reverse

Name: pyrF [H]

Synonym: nfa36180

Alternate gene names: 54025588

Gene position: 3830126-3829281 (Counterclockwise)

Preceding gene: 54025589

Following gene: 54025587

Centisome position: 63.61

GC content: 73.88

Gene sequence:

>846_bases
GTGAGCGGGCACGGTGGCGGCGTGACCGGGTTCGGTACCCGGTTGCGCGCCGCGATGGACCGCTTCGGTCCGCTCTGCGT
CGGCATCGACCCACATCCGCCGCTGCTGGCGGACTGGGGGCTGACCGACGACGCCGAGGGTCTGGAGCGCTTCGCCGAGA
TCTGCGTGGAGGCCTTCGACGGCACCGTCGCGCTGGTGAAGCCGCAGGTCGCGTTCTTCGAGGTCTACGGTTCGGCGGGC
ATCGCCGTGCTCGAACGCACCATCGAGGTGTTGCGTGCCTCGGGCACCCTGGTGCTCGCCGACGCCAAGCGCGGTGACAT
CGGCTCCACCATGGCCGCCTACGCCCGCACCTGGCTCGGCGACGGACCGCTGGGTTCGGACGCGGTGACGGTGTCGCCGT
ATCTCGGATTCGGGTCGCTCGACCCGGCGCTGGAGCTGGCCGCGGCGGGCGGTCGGGGGGTGTTCGTGCTGGCCGCGACC
TCCAATCCGGAGGGCGCGCAGGTGCAGACCGCCGTCGGCGCCGGCGGTCGCAGCGTCGCTCAGACGATGGTCGACGAGGT
CGCGGCCCGCAACGCCGGTGCGGAGTTCGGGTCGGTCGGCGTCGTGGTCGGCGCGACCCTCGCCGCCGCGCCGGAGCTGG
CCGGACTCAACGGCCCGATCCTGATGCCCGGCGTGGGGGCCCAGGGCGGTGGTCCCGCATCCGTCCGGGAGCTGGTGCCC
GCGGACCTGCTTCCGGCGGTCGTGCCCAACGTCTCCCGCGAGGTGCTGCGGCACGGCCCGTCGGTGTCGGCCCTGCGCGA
GCGGCTGGCCGCGCTCCAGGAGGACTTCGCGTTCCTGCGGAGGTGA

Upstream 100 bases:

>100_bases
CGGTGCAGGGCGCGGCGGCCGCGGTGCAGGGCATCGAGGCCAGCATCACCGGCGGCATCGGCGTACGGTCCCTGCAGGAA
CTGCACTCGGCACTGCGCGG

Downstream 100 bases:

>100_bases
GCAGTCCGCCCCGGGCCGGACCGGGGTTTGAAACGGCGCCCGAGTGGGTACAGGCCGCCGTGCTGCCCGCTGAACGGCGT
TCTCCAGCGTCAACGCGGCT

Product: putative orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSGHGGGVTGFGTRLRAAMDRFGPLCVGIDPHPPLLADWGLTDDAEGLERFAEICVEAFDGTVALVKPQVAFFEVYGSAG
IAVLERTIEVLRASGTLVLADAKRGDIGSTMAAYARTWLGDGPLGSDAVTVSPYLGFGSLDPALELAAAGGRGVFVLAAT
SNPEGAQVQTAVGAGGRSVAQTMVDEVAARNAGAEFGSVGVVVGATLAAAPELAGLNGPILMPGVGAQGGGPASVRELVP
ADLLPAVVPNVSREVLRHGPSVSALRERLAALQEDFAFLRR

Sequences:

>Translated_281_residues
MSGHGGGVTGFGTRLRAAMDRFGPLCVGIDPHPPLLADWGLTDDAEGLERFAEICVEAFDGTVALVKPQVAFFEVYGSAG
IAVLERTIEVLRASGTLVLADAKRGDIGSTMAAYARTWLGDGPLGSDAVTVSPYLGFGSLDPALELAAAGGRGVFVLAAT
SNPEGAQVQTAVGAGGRSVAQTMVDEVAARNAGAEFGSVGVVVGATLAAAPELAGLNGPILMPGVGAQGGGPASVRELVP
ADLLPAVVPNVSREVLRHGPSVSALRERLAALQEDFAFLRR
>Mature_280_residues
SGHGGGVTGFGTRLRAAMDRFGPLCVGIDPHPPLLADWGLTDDAEGLERFAEICVEAFDGTVALVKPQVAFFEVYGSAGI
AVLERTIEVLRASGTLVLADAKRGDIGSTMAAYARTWLGDGPLGSDAVTVSPYLGFGSLDPALELAAAGGRGVFVLAATS
NPEGAQVQTAVGAGGRSVAQTMVDEVAARNAGAEFGSVGVVVGATLAAAPELAGLNGPILMPGVGAQGGGPASVRELVPA
DLLPAVVPNVSREVLRHGPSVSALRERLAALQEDFAFLRR

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR018089
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 28484; Mature: 28353

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHGGGVTGFGTRLRAAMDRFGPLCVGIDPHPPLLADWGLTDDAEGLERFAEICVEAFD
CCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC
GTVALVKPQVAFFEVYGSAGIAVLERTIEVLRASGTLVLADAKRGDIGSTMAAYARTWLG
CCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
DGPLGSDAVTVSPYLGFGSLDPALELAAAGGRGVFVLAATSNPEGAQVQTAVGAGGRSVA
CCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCHHHH
QTMVDEVAARNAGAEFGSVGVVVGATLAAAPELAGLNGPILMPGVGAQGGGPASVRELVP
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCHHHHHHCC
ADLLPAVVPNVSREVLRHGPSVSALRERLAALQEDFAFLRR
HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGHGGGVTGFGTRLRAAMDRFGPLCVGIDPHPPLLADWGLTDDAEGLERFAEICVEAFD
CCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC
GTVALVKPQVAFFEVYGSAGIAVLERTIEVLRASGTLVLADAKRGDIGSTMAAYARTWLG
CCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
DGPLGSDAVTVSPYLGFGSLDPALELAAAGGRGVFVLAATSNPEGAQVQTAVGAGGRSVA
CCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCHHHH
QTMVDEVAARNAGAEFGSVGVVVGATLAAAPELAGLNGPILMPGVGAQGGGPASVRELVP
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCHHHHHHCC
ADLLPAVVPNVSREVLRHGPSVSALRERLAALQEDFAFLRR
HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA