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The map label for this gene is rpoZ

Identifier: 54025585

GI number: 54025585

Start: 3827382

End: 3827657

Strand: Reverse

Name: rpoZ

Synonym: nfa36150

Alternate gene names: 54025585

Gene position: 3827657-3827382 (Counterclockwise)

Preceding gene: 54025586

Following gene: 54025584

Centisome position: 63.57

GC content: 67.03

Gene sequence:

>276_bases
GTGAGCGACACCAAGACCGCGCCCGCGTACGACACCCCGATCGGTCTGACCAACCCCCCGATCGACGAGCTGCTCGAGCG
CACGTCGTCGAAGTACGCGCTGGTCATCTACGCGGCCAAGCGGGCACGGCAGATCAACGACTACTACAACCAGCTCGGCG
ACGGCATCCTCGAATACGTCGGCCCGCTGGTCGAGCCCGGCCTGCAGGAGAAGCCGCTGTCGGTCGCGCTGCGCGAGATC
CACGCCGACCTGCTCGAGCACTCCGAAGGCGAGTGA

Upstream 100 bases:

>100_bases
GCGTGCCGGCCGCCGACTCGGATCGCGATACCCATCCGCGATACCGACCGAGACACCCACCGAAACAAGCACCCACCGAC
AAGCCGCAGGAGCCTCACGA

Downstream 100 bases:

>100_bases
CTCCTCCTCGGCGCCCCGCCGAGGACCGCATGAACACGGAGGCGTAGTGAGCACACGCATCGTCGTCGGCGTCGGCGGCG
GGATCGCCGCCTACAAGGCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MSDTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSVALREI
HADLLEHSEGE

Sequences:

>Translated_91_residues
MSDTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSVALREI
HADLLEHSEGE
>Mature_90_residues
SDTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSVALREIH
ADLLEHSEGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_NOCFA (Q5YTM8)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119827.1
- ProteinModelPortal:   Q5YTM8
- GeneID:   3111509
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa36150
- NMPDR:   fig|247156.1.peg.3528
- HOGENOM:   HBG742204
- OMA:   VIFAAKR
- ProtClustDB:   PRK00392
- BioCyc:   NFAR247156:NFA36150-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10084; Mature: 9953

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYV
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GPLVEPGLQEKPLSVALREIHADLLEHSEGE
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYV
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GPLVEPGLQEKPLSVALREIHADLLEHSEGE
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA