| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025565
Identifier: 54025565
GI number: 54025565
Start: 3806328
End: 3807023
Strand: Reverse
Name: 54025565
Synonym: nfa35950
Alternate gene names: NA
Gene position: 3807023-3806328 (Counterclockwise)
Preceding gene: 54025568
Following gene: 54025564
Centisome position: 63.23
GC content: 71.55
Gene sequence:
>696_bases GTGGCGATCGAGGCGGTGTTGTTCGACTTCTCCGGCACGCTCTTCCGATTGGAGGAGGATCCCTCCTGGACCGACGAACT CGTCGACGCGGACGGCCGCGCGTTCGACGTACACGAGAAGGCCGAGATCCTGCGCCGGATGACAGCGCCCGTGCAGCAAC TCGTCGAGTTCGACGAGGCCGGTCAGTACGCCTGGGACAACCGGGATCTCGACCCGGCCCTGCACCGGCGCGCCTATCTG GAAGTGCTGCGGAAATCCGGGGTGCCCACCGAGGAGCAGGCGGCGCGGTTGTACGGGCGGCTGATCGACCCGCTGGCCTG GACCCCCTATCCCGACACCGGGACCGTGCTGGAATTCCTTGCCGGCCACGGCGTCCGGACGGCCGTGGTCAGCAACATCG CCTTCGACGTGCGCCCGGCCTTCGCGACCCGCGGCTGGGATGCCCTCCTGGACGCGGTGACGCTGTCGTACGAGGTCGGC GCGATCAAGCCGGACCCGCGCATCTTCCGCGCCGCGCTGGACAAGCTCGGTGTGGCGCCGGAGGCGGCGCTCATGGTGGG CGACAGCGCGGTGGCCGACGGCGGCGCGAGCGCACTGGGCTGCCGGTTCGCGCTGGTGGACCCGCTGCCCACCGCCGAGC GTCCCGACGCCCTGGTCGACGCGTTGCGCGCGCACGGGCTGGCCGTCCCGCGCTGA
Upstream 100 bases:
>100_bases CAAGACAAAGTCTTTCGCTCGCGGTGAACGGAAATGTTGCCGGATCGTGTCGCGACACGCGGGCCGCGATGCGGGCACGC CGTATCGGTAGGCTGGCCGC
Downstream 100 bases:
>100_bases CCAGCGCGCGCCGGGCTGTCGGAGGCGGTCGATAGGCTGGTCACGTGGCAGATCCAGCGACGTACCGGCCCGCGCCGGGC ACCATCCCCGTCGAGCCGGG
Product: putative hydrolase
Products: NA
Alternate protein names: HAD Family Hydrolase; Haloacid Dehalogenase Domain Protein Hydrolase; HAD-Superfamily Hydrolase Subfamily IA; HAD-Superfamily Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Haloacid Dehalogenase Superfamily Protein
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYL EVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVG AIKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR
Sequences:
>Translated_231_residues MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYL EVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVG AIKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR >Mature_230_residues AIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYLE VLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGA IKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25153; Mature: 25021
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEA CCCEEEEEECCCCEEEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHC GQYAWDNRDLDPALHRRAYLEVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH AGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGAIKPDPRIFRAALDKLGVAP HCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC EAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR CHHEEECCCHHCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure AIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEA CCEEEEEECCCCEEEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHC GQYAWDNRDLDPALHRRAYLEVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH AGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGAIKPDPRIFRAALDKLGVAP HCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC EAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR CHHEEECCCHHCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA