Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54025452

Identifier: 54025452

GI number: 54025452

Start: 3692210

End: 3692800

Strand: Reverse

Name: 54025452

Synonym: nfa34820

Alternate gene names: NA

Gene position: 3692800-3692210 (Counterclockwise)

Preceding gene: 54025457

Following gene: 54025451

Centisome position: 61.33

GC content: 68.53

Gene sequence:

>591_bases
GTGGCTGGACAGACCGGATGGAAGATGGCCCCCTCGCACACCTCGGTTTTCTCCCCGCTCGCCGCGGAACTGCCGCCCAC
CGTCGACGCGAACACCCTGGAGTCGATCAAGGAGGACGTCGCCGACAACCATGTGGCGGCGCCGAAGGGCAAGGACCAGT
CCGGACTCGAGGCGATCGTGGCCGAAGCGCGAGCCGAGGGCATCCCGCTGAGCATCGTGGTGATTCCCGGCAATCCCGGT
CACGACTCCAATCTACGGGACCTGGCCACCGAGGTCGGCAAGACCGAGCAGGGCACCGTGGTGGTCCTCAGTGACGACTG
GGTGGGCACCTACAGCGATTCGATCAGCCGGGTCAAGCTCGAGTGGGCCGAGGACGCGGCCAAGAGCAAACAGGGCAACT
CGGTGGAGGCCGCGCGCATCTTCGTCGACCGGCTCGAACAGCCGGAGACCTTCTCCTGGACCGCCATCACCGGTGTGCTC
ATCGCGGGCACCGCGCTGGCGGTGGCAGGTCTCCATCTGATCAAGGCGCGCCGCGCCGCCGCGCAGGAGCGGCCCGCCGT
CGCCGAGCGGGACACCGCCACCATCGCCTGA

Upstream 100 bases:

>100_bases
TGCGGGGTGCGGTCGGCGTGGCGTGGGCGAACACCCGGTGACCGCGTGACGTACTGTGCTCTGGCAGTGTTGGATGCCCG
CCGCCGCGCACCTCGGTGAC

Downstream 100 bases:

>100_bases
TTCTCGACCGGCGCCGCGTCCGTCGGGGAGTTTTCCAGACGGTCGGTATGTTTTCCGGCAGCAAACCCGAACTCGTATCC
GGCTAATGCCCGGCAACGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPG
HDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVL
IAGTALAVAGLHLIKARRAAAQERPAVAERDTATIA

Sequences:

>Translated_196_residues
MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPG
HDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVL
IAGTALAVAGLHLIKARRAAAQERPAVAERDTATIA
>Mature_195_residues
AGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPGH
DSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLI
AGTALAVAGLHLIKARRAAAQERPAVAERDTATIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20616; Mature: 20485

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIV
CCCCCCCEECCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AEARAEGIPLSIVVIPGNPGHDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKL
HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHEEEE
EWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLIAGTALAVAGLHLIKARRAA
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQERPAVAERDTATIA
HHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIV
CCCCCCEECCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AEARAEGIPLSIVVIPGNPGHDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKL
HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHEEEE
EWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLIAGTALAVAGLHLIKARRAA
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQERPAVAERDTATIA
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA