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The map label for this gene is ybbK [C]

Identifier: 54025441

GI number: 54025441

Start: 3680869

End: 3682098

Strand: Reverse

Name: ybbK [C]

Synonym: nfa34710

Alternate gene names: 54025441

Gene position: 3682098-3680869 (Counterclockwise)

Preceding gene: 54025442

Following gene: 54025440

Centisome position: 61.15

GC content: 69.51

Gene sequence:

>1230_bases
ATGGCTGTATTGATCGTCGCCGCGGTGCTGGTGCTGCTCATCGTGGTGGTGGCCTTCAAATCGATCGCGCTGGTGCCGCA
GGCCGAGGCCGCCGTCATCGAGCGGCTCGGGCGGTATTCGCGGACGGTGTCGGGCCAGCTGACCTTCCTGGTGCCCTTCG
CCGACCGCATCCGGGCCAAGGTCGACCTGCGCGAGCGGGTGGTCTCCTTCCCGCCGCAGCCGGTGATCACCCAGGACAAC
CTCACCCTGCAGATCGACTCGGTGGTGTATTTCCAGGTCACCAGTCCGCAGGCGGCGGTCTACGAGATCAGCAACTACAT
CGCCGCGGTCGAACAACTCACCGTCACCACCCTGCGCAACGTCGTGGGCGGGATGACGCTGGAGGAGACGCTGACCTCGC
GCGACCAGATCAACAGCCAGCTGCGCGGCGTCCTCGACGAGGCGACCGGACGCTGGGGCCTGCGGGTGGCCCGCGTCGAG
CTCAAGGCCATCGATCCGCCGCCCTCCATCCAGGAATCGATGGAGAAGCAGATGAAGGCCGACCGTGAGAAGCGGGCGAT
GATCCTCACCGCGGAGGGCACCCGCGAATCGCAGATCAAGACGGCCGAGGGCGCCAAGCAGGCGCAGATCCTCGCCGCGG
AAGGTGCCAAGCAGTCGGCGATCCTGGCGGCCGAGGGTGAACGCCAGAGCCGCATCCTGCGCGCGCAGGGTGAGCGGGCG
GCGGCGTACCTGCAGGCGCAGGGCCAGGCCAAGGCGATCGAGAAGGTCTTCGCCGCGATCAAGGCGGGCAAGCCGACCCC
GGAGTTGCTGGCCTACCAGTACATGCAGACGTTGCCGATGGTCGCCCGCGGCGATGCCAACAAGGTCTGGCTGGTGCCCA
GCGATTTCGGCAAGGCGCTGGAAGGCTTCGCCAAGAGCTTCGCGAGCAAGGACGCCGACGGCGTGTTCCGCTACGAGCCG
CCCGCCGACGACAGCGAACCGGTGAAGGTGGAGGACGACTCCGACGTGGCCGACTGGTTCGACATGGCGTCGGACCCGAC
CATCGAACGTGCCGTGCGCGCCGCCGAGGCGACCGCACGTCAGCCGGTCGAGGGGATGGCGCCGCCGGTGGGCCAGCCGG
TGCGGCCGCCCGCGCCCCAGCAACCGCCCGCGCAGCAGCAGGCATGGCCGCCCGCGCCGCAGACGGATCCGCAGGACGGT
GCGTGGCAGCCACGCCCGGGCACACCGTGA

Upstream 100 bases:

>100_bases
CGGCGCGGCCGATGAATCAGGGGGACGTCTTCGAACCGGGGACGACCGTGTCCGTGATGGAGATCGACGGCGCGACGGCC
GTCGTGTGGAAGGGTCCGTG

Downstream 100 bases:

>100_bases
CCGACTGATTGGACAGAGCTCTGCGACTCCCGCCGTGCCGTTTGCTGAAAAGTTGCGGACGGTCCGGTATCGGGTTACGG
TGTGTGCCGTTCGAGGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAVLIVAAVLVLLIVVVAFKSIALVPQAEAAVIERLGRYSRTVSGQLTFLVPFADRIRAKVDLRERVVSFPPQPVITQDN
LTLQIDSVVYFQVTSPQAAVYEISNYIAAVEQLTVTTLRNVVGGMTLEETLTSRDQINSQLRGVLDEATGRWGLRVARVE
LKAIDPPPSIQESMEKQMKADREKRAMILTAEGTRESQIKTAEGAKQAQILAAEGAKQSAILAAEGERQSRILRAQGERA
AAYLQAQGQAKAIEKVFAAIKAGKPTPELLAYQYMQTLPMVARGDANKVWLVPSDFGKALEGFAKSFASKDADGVFRYEP
PADDSEPVKVEDDSDVADWFDMASDPTIERAVRAAEATARQPVEGMAPPVGQPVRPPAPQQPPAQQQAWPPAPQTDPQDG
AWQPRPGTP

Sequences:

>Translated_409_residues
MAVLIVAAVLVLLIVVVAFKSIALVPQAEAAVIERLGRYSRTVSGQLTFLVPFADRIRAKVDLRERVVSFPPQPVITQDN
LTLQIDSVVYFQVTSPQAAVYEISNYIAAVEQLTVTTLRNVVGGMTLEETLTSRDQINSQLRGVLDEATGRWGLRVARVE
LKAIDPPPSIQESMEKQMKADREKRAMILTAEGTRESQIKTAEGAKQAQILAAEGAKQSAILAAEGERQSRILRAQGERA
AAYLQAQGQAKAIEKVFAAIKAGKPTPELLAYQYMQTLPMVARGDANKVWLVPSDFGKALEGFAKSFASKDADGVFRYEP
PADDSEPVKVEDDSDVADWFDMASDPTIERAVRAAEATARQPVEGMAPPVGQPVRPPAPQQPPAQQQAWPPAPQTDPQDG
AWQPRPGTP
>Mature_408_residues
AVLIVAAVLVLLIVVVAFKSIALVPQAEAAVIERLGRYSRTVSGQLTFLVPFADRIRAKVDLRERVVSFPPQPVITQDNL
TLQIDSVVYFQVTSPQAAVYEISNYIAAVEQLTVTTLRNVVGGMTLEETLTSRDQINSQLRGVLDEATGRWGLRVARVEL
KAIDPPPSIQESMEKQMKADREKRAMILTAEGTRESQIKTAEGAKQAQILAAEGAKQSAILAAEGERQSRILRAQGERAA
AYLQAQGQAKAIEKVFAAIKAGKPTPELLAYQYMQTLPMVARGDANKVWLVPSDFGKALEGFAKSFASKDADGVFRYEPP
ADDSEPVKVEDDSDVADWFDMASDPTIERAVRAAEATARQPVEGMAPPVGQPVRPPAPQQPPAQQQAWPPAPQTDPQDGA
WQPRPGTP

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=299, Percent_Identity=37.4581939799331, Blast_Score=178, Evalue=7e-45,
Organism=Homo sapiens, GI21686995, Length=212, Percent_Identity=36.3207547169811, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI221316744, Length=212, Percent_Identity=36.3207547169811, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI38016911, Length=210, Percent_Identity=34.2857142857143, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI7657615, Length=191, Percent_Identity=26.7015706806283, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI1786697, Length=308, Percent_Identity=38.3116883116883, Blast_Score=213, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI32564147, Length=276, Percent_Identity=36.5942028985507, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI193209764, Length=230, Percent_Identity=33.4782608695652, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17569493, Length=230, Percent_Identity=33.4782608695652, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17569499, Length=198, Percent_Identity=36.8686868686869, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI25153583, Length=207, Percent_Identity=36.7149758454106, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71987612, Length=207, Percent_Identity=36.7149758454106, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI193210507, Length=230, Percent_Identity=33.4782608695652, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17570161, Length=230, Percent_Identity=33.4782608695652, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71987621, Length=205, Percent_Identity=35.609756097561, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17569497, Length=209, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71989948, Length=160, Percent_Identity=40, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71989955, Length=160, Percent_Identity=40, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17570459, Length=202, Percent_Identity=36.6336633663366, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32566490, Length=183, Percent_Identity=34.9726775956284, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71989963, Length=123, Percent_Identity=36.5853658536585, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45550506, Length=286, Percent_Identity=34.965034965035, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=31.6666666666667, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=31.6666666666667, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI18860517, Length=206, Percent_Identity=36.4077669902913, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI21356845, Length=213, Percent_Identity=30.9859154929577, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45556022, Length=216, Percent_Identity=35.6481481481481, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI28573263, Length=204, Percent_Identity=34.8039215686275, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI281365664, Length=195, Percent_Identity=34.8717948717949, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24657857, Length=195, Percent_Identity=34.8717948717949, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI62484448, Length=195, Percent_Identity=34.8717948717949, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI62484274, Length=195, Percent_Identity=34.8717948717949, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI281361635, Length=177, Percent_Identity=32.7683615819209, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 44426; Mature: 44295

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVLIVAAVLVLLIVVVAFKSIALVPQAEAAVIERLGRYSRTVSGQLTFLVPFADRIRAK
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
VDLRERVVSFPPQPVITQDNLTLQIDSVVYFQVTSPQAAVYEISNYIAAVEQLTVTTLRN
HHHHHHHHCCCCCCCEECCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VVGGMTLEETLTSRDQINSQLRGVLDEATGRWGLRVARVELKAIDPPPSIQESMEKQMKA
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH
DREKRAMILTAEGTRESQIKTAEGAKQAQILAAEGAKQSAILAAEGERQSRILRAQGERA
CHHHCEEEEEECCCCCHHHHHHCCCHHHEEEECCCCCCCEEEEECCCHHHHHHHHCCCHH
AAYLQAQGQAKAIEKVFAAIKAGKPTPELLAYQYMQTLPMVARGDANKVWLVPSDFGKAL
HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEEECHHHHHH
EGFAKSFASKDADGVFRYEPPADDSEPVKVEDDSDVADWFDMASDPTIERAVRAAEATAR
HHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHC
QPVEGMAPPVGQPVRPPAPQQPPAQQQAWPPAPQTDPQDGAWQPRPGTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVLIVAAVLVLLIVVVAFKSIALVPQAEAAVIERLGRYSRTVSGQLTFLVPFADRIRAK
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
VDLRERVVSFPPQPVITQDNLTLQIDSVVYFQVTSPQAAVYEISNYIAAVEQLTVTTLRN
HHHHHHHHCCCCCCCEECCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VVGGMTLEETLTSRDQINSQLRGVLDEATGRWGLRVARVELKAIDPPPSIQESMEKQMKA
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH
DREKRAMILTAEGTRESQIKTAEGAKQAQILAAEGAKQSAILAAEGERQSRILRAQGERA
CHHHCEEEEEECCCCCHHHHHHCCCHHHEEEECCCCCCCEEEEECCCHHHHHHHHCCCHH
AAYLQAQGQAKAIEKVFAAIKAGKPTPELLAYQYMQTLPMVARGDANKVWLVPSDFGKAL
HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEEECHHHHHH
EGFAKSFASKDADGVFRYEPPADDSEPVKVEDDSDVADWFDMASDPTIERAVRAAEATAR
HHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHC
QPVEGMAPPVGQPVRPPAPQQPPAQQQAWPPAPQTDPQDGAWQPRPGTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]