| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025423
Identifier: 54025423
GI number: 54025423
Start: 3659611
End: 3660486
Strand: Reverse
Name: 54025423
Synonym: nfa34530
Alternate gene names: NA
Gene position: 3660486-3659611 (Counterclockwise)
Preceding gene: 54025432
Following gene: 54025422
Centisome position: 60.79
GC content: 68.95
Gene sequence:
>876_bases ATGGGTACTGCCGCGTATACCGAGCAGGCGCATGCGATCCACCCCCGCGATGTCGCCTTCGACTTCTCCACCGTGCCGAT GCACTACATCCCCGGCGAGGTGATGGCCACCCACATCATCAACGTGATGCATCTGGTGCTGCCCGAGGGGGAACGGGCGA TGGCCGCCGCCCTGGCCGAGGCCTTGCCGCTGATCTCCGACGAACGGCTGGCCGAGGAGGTGCGTGGTTTCATCGGCCAG GAGGCCATGCACGCCAGCTCCCATGAAGAGGCACGCCGGCAGCTCGAGCGGCTCGGCCTCGAGGTCGGGCCGATGGTCGA GCTGGTCGCCTGGCTGGTCGACCGCGTGCTCGGCGACCACGGACTCACCGGCAAGGCGGCGCACGCCTGGCTGTGCGAAC GGCTGGCGCTGTTCGCGGGCATGGAGCACTACACGGCCGTGATCGGGGAATGGCTGCTCACCAACGACGTGCTCGAGGAC AAGGGTATGCACCCGGCCATGCTGGATCTGATCCGCTGGCACGGCGCCGAGGAAGTGGAGCATCGCAGCGTGGTCTACGA CGCCTACATGCACGTCGACGGCAGCTACGCCCGCAAGGCGCGGCAGGCGCTGATCGCGAGCATGGGCCTGCTGGTGCTGT TCATCGCCTCCGGCGGCTACCTGTTCGCCAAGGATCCCTCGCCGCGCAAGGGCCGCTGGTGGCCGCTGCAGCTGGCGAGC GCGTCCCTGCGCGGCGTGGTGCCCAGCTTCACCACCTTCTTCACCGAGATCCCGCGCTACCTGCGCCCGGGCTTCCATCC CTCCCAGCTCGGCCCGATGGACAACGCGCTGCGCTACCTGGCCACTTCGCCCGCCGCCCGCGGCGGACAGTCATGA
Upstream 100 bases:
>100_bases TCACACCGAAAAGTTGACATCACCTGATGTTGACATTGACTGATGTCAGCAAATATCGTCTAGTTCTCCGGTTTCAACGA CGAGACGTGAGGACAGTCCG
Downstream 100 bases:
>100_bases CCACCGGCTACCGGCCCGGTGCCGGCATCCGGTTGATCGTCTCGGCCACCGACGCCTACAAACGGTTGTTCGTGCAGAGT CCGGCCGCGCCGTTGCTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase-Like Protein; FF Domain-Containing Protein; Conserved Protein UCP; FF Domain Protein; Phthalate 4 5-Dioxygenase; Metal Hydrolase
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MGTAAYTEQAHAIHPRDVAFDFSTVPMHYIPGEVMATHIINVMHLVLPEGERAMAAALAEALPLISDERLAEEVRGFIGQ EAMHASSHEEARRQLERLGLEVGPMVELVAWLVDRVLGDHGLTGKAAHAWLCERLALFAGMEHYTAVIGEWLLTNDVLED KGMHPAMLDLIRWHGAEEVEHRSVVYDAYMHVDGSYARKARQALIASMGLLVLFIASGGYLFAKDPSPRKGRWWPLQLAS ASLRGVVPSFTTFFTEIPRYLRPGFHPSQLGPMDNALRYLATSPAARGGQS
Sequences:
>Translated_291_residues MGTAAYTEQAHAIHPRDVAFDFSTVPMHYIPGEVMATHIINVMHLVLPEGERAMAAALAEALPLISDERLAEEVRGFIGQ EAMHASSHEEARRQLERLGLEVGPMVELVAWLVDRVLGDHGLTGKAAHAWLCERLALFAGMEHYTAVIGEWLLTNDVLED KGMHPAMLDLIRWHGAEEVEHRSVVYDAYMHVDGSYARKARQALIASMGLLVLFIASGGYLFAKDPSPRKGRWWPLQLAS ASLRGVVPSFTTFFTEIPRYLRPGFHPSQLGPMDNALRYLATSPAARGGQS >Mature_290_residues GTAAYTEQAHAIHPRDVAFDFSTVPMHYIPGEVMATHIINVMHLVLPEGERAMAAALAEALPLISDERLAEEVRGFIGQE AMHASSHEEARRQLERLGLEVGPMVELVAWLVDRVLGDHGLTGKAAHAWLCERLALFAGMEHYTAVIGEWLLTNDVLEDK GMHPAMLDLIRWHGAEEVEHRSVVYDAYMHVDGSYARKARQALIASMGLLVLFIASGGYLFAKDPSPRKGRWWPLQLASA SLRGVVPSFTTFFTEIPRYLRPGFHPSQLGPMDNALRYLATSPAARGGQS
Specific function: Unknown
COG id: COG3687
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32171; Mature: 32040
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTAAYTEQAHAIHPRDVAFDFSTVPMHYIPGEVMATHIINVMHLVLPEGERAMAAALAE CCCCCCCCHHHCCCCCCCEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ALPLISDERLAEEVRGFIGQEAMHASSHEEARRQLERLGLEVGPMVELVAWLVDRVLGDH HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC GLTGKAAHAWLCERLALFAGMEHYTAVIGEWLLTNDVLEDKGMHPAMLDLIRWHGAEEVE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH HRSVVYDAYMHVDGSYARKARQALIASMGLLVLFIASGGYLFAKDPSPRKGRWWPLQLAS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH ASLRGVVPSFTTFFTEIPRYLRPGFHPSQLGPMDNALRYLATSPAARGGQS HHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GTAAYTEQAHAIHPRDVAFDFSTVPMHYIPGEVMATHIINVMHLVLPEGERAMAAALAE CCCCCCCHHHCCCCCCCEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ALPLISDERLAEEVRGFIGQEAMHASSHEEARRQLERLGLEVGPMVELVAWLVDRVLGDH HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC GLTGKAAHAWLCERLALFAGMEHYTAVIGEWLLTNDVLEDKGMHPAMLDLIRWHGAEEVE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH HRSVVYDAYMHVDGSYARKARQALIASMGLLVLFIASGGYLFAKDPSPRKGRWWPLQLAS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH ASLRGVVPSFTTFFTEIPRYLRPGFHPSQLGPMDNALRYLATSPAARGGQS HHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA