Click here to switch to the map view.

The map label for this gene is licA

Identifier: 54019993

GI number: 54019993

Start: 54678

End: 55487

Strand: Direct

Name: licA

Synonym: mhp042

Alternate gene names: 54019993

Gene position: 54678-55487 (Clockwise)

Preceding gene: 54019992

Following gene: 54019994

Centisome position: 6.12

GC content: 24.69

Gene sequence:

>810_bases
ATGCTAGGGCGGAAAATAATAGTAAAAATTTCAGCCCTAGTAATAATTTTTATTTTAAAATTTGAAAAATATAATAAAAT
TTCCAGTATGAAAAAAATTTTGATTGGATTTACTAATGAATCATTCCGCGAGGGTAACAAATTTATACAAAAAAAAATCC
ATAATGGAATGAATCATAAAATAGATTATAATATTTTATCAAATTTTAATTTTGTTCCAAAATTAATTTTAAATTCTAAT
GAAAAAATTATTTGGGAGTGGATTGATGGCGAAAAAGTTGAACCAAAAATTGAAACACTAGAAAAAATTGCTTCTCAATT
AAGAGAAATTCATAATTCCAACCTTGATTTTCCTCCCTCAAATCATTCCTTTCGGGTTGAGCATTATTTGAAAGTTTTAT
CTGAAAAAGGTATAAATAATACAGTTATTGTAAAATATTATGACTTTATTAAGAAAATTCTTCAAAAAATGGATAAATCC
AAGCCACTTCATAATGATTTGTGGTTGATGAATATGATTGAAAAAGATCAGAAAATCTACTTTTTAGACTGGGAGTATGC
ATCAAAAGGTGATATTCATTTTGATTTGGCTTATTTTATTGAATCAGCCAAACTAAATAGTGAAAAAGAACGCATTTTTT
TAAATTTTTATGGTATAATTAATTATGAAAATCTTCTATTACAAAAAATTTTAGTATTATACCTTATAATATTGTGAGTA
AATGCGCAAGAAACAAAACATTTTGATGATACACCTTATGCGAAAAAACTAGAAGATTTATATTTGGTTTTTGCATCTCG
AAAGGAATAA

Upstream 100 bases:

>100_bases
TAAGATTTTTTAAACATTTTAATAAAAAATGGAAAAATTTAGGAAAAAGTGGCCATTTTTCCTTTTTTTGAAAAAATTTT
GTATTTTTTCATAAAATATT

Downstream 100 bases:

>100_bases
AATGCGATTTGTCGACTATGTTTCAATCGAAGTCGTGGCCGGAAAAGGTGGCGATGGGATAATATCGTTTCGCCGGGAAG
CTCATGTCGACAAAGGTGGG

Product: PTS system, lichenan-specific IIA component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MLGRKIIVKISALVIIFILKFEKYNKISSMKKILIGFTNESFREGNKFIQKKIHNGMNHKIDYNILSNFNFVPKLILNSN
EKIIWEWIDGEKVEPKIETLEKIASQLREIHNSNLDFPPSNHSFRVEHYLKVLSEKGINNTVIVKYYDFIKKILQKMDKS
KPLHNDLWLMNMIEKDQKIYFLDWEYASKGDIHFDLAYFIESAKLNSEKERIFLNFYGIINYENLLLQKILVLYLIILWV
NAQETKHFDDTPYAKKLEDLYLVFASRKE

Sequences:

>Translated_269_residues
MLGRKIIVKISALVIIFILKFEKYNKISSMKKILIGFTNESFREGNKFIQKKIHNGMNHKIDYNILSNFNFVPKLILNSN
EKIIWEWIDGEKVEPKIETLEKIASQLREIHNSNLDFPPSNHSFRVEHYLKVLSEKGINNTVIVKYYDFIKKILQKMDKS
KPLHNDLWLMNMIEKDQKIYFLDWEYASKGDIHFDLAYFIESAKLNSEKERIFLNFYGIINYENLLLQKILVLYLIIL*V
NAQETKHFDDTPYAKKLEDLYLVFASRKE
>Mature_269_residues
MLGRKIIVKISALVIIFILKFEKYNKISSMKKILIGFTNESFREGNKFIQKKIHNGMNHKIDYNILSNFNFVPKLILNSN
EKIIWEWIDGEKVEPKIETLEKIASQLREIHNSNLDFPPSNHSFRVEHYLKVLSEKGINNTVIVKYYDFIKKILQKMDKS
KPLHNDLWLMNMIEKDQKIYFLDWEYASKGDIHFDLAYFIESAKLNSEKERIFLNFYGIINYENLLLQKILVLYLIIL*V
NAQETKHFDDTPYAKKLEDLYLVFASRKE

Specific function: Unknown

COG id: COG0510

COG function: function code M; Predicted choline kinase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002573
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01633 Choline_kinase [H]

EC number: NA

Molecular weight: Translated: 31874; Mature: 31874

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRKIIVKISALVIIFILKFEKYNKISSMKKILIGFTNESFREGNKFIQKKIHNGMNHK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
IDYNILSNFNFVPKLILNSNEKIIWEWIDGEKVEPKIETLEKIASQLREIHNSNLDFPPS
EEEHHHCCCCHHHHHEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NHSFRVEHYLKVLSEKGINNTVIVKYYDFIKKILQKMDKSKPLHNDLWLMNMIEKDQKIY
CCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE
FLDWEYASKGDIHFDLAYFIESAKLNSEKERIFLNFYGIINYENLLLQKILVLYLIILVN
EEEECCCCCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHC
AQETKHFDDTPYAKKLEDLYLVFASRKE
CHHCCCCCCCCHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MLGRKIIVKISALVIIFILKFEKYNKISSMKKILIGFTNESFREGNKFIQKKIHNGMNHK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
IDYNILSNFNFVPKLILNSNEKIIWEWIDGEKVEPKIETLEKIASQLREIHNSNLDFPPS
EEEHHHCCCCHHHHHEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NHSFRVEHYLKVLSEKGINNTVIVKYYDFIKKILQKMDKSKPLHNDLWLMNMIEKDQKIY
CCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE
FLDWEYASKGDIHFDLAYFIESAKLNSEKERIFLNFYGIINYENLLLQKILVLYLIILVN
EEEECCCCCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHC
AQETKHFDDTPYAKKLEDLYLVFASRKE
CHHCCCCCCCCHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8233831 [H]