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The map label for this gene is yfdE [H]

Identifier: 53723173

GI number: 53723173

Start: 2918645

End: 2919922

Strand: Reverse

Name: yfdE [H]

Synonym: BPSS2157

Alternate gene names: 53723173

Gene position: 2919922-2918645 (Counterclockwise)

Preceding gene: 53723174

Following gene: 53723172

Centisome position: 92.02

GC content: 70.03

Gene sequence:

>1278_bases
ATGGATGTTCGACAAACGCAGGTCGAGGAACGCGCGTCGCCGCGCCGCCGCGCGGACACGGGGCCGATTCACGCGAAGCG
CTTCGACGCCGATGCGCGCGGCCCGCTTGCGGGCGTGCGCGTCGTCGATCTGTCGCGGCTGATGGCGGGCAACATGCTGA
GCCTTCAGCTCGCGGATTTCGGCGCGGACGTCGTGAAGGTGGAGAACGAGCGCGGCGACACGCTGCGCGCGGTCGGCGCG
GGCGGCGTCAGCACCAACTGGAAGGTGTACGGGCGCAACAAGCGCAGCGTGTGCGTCGATCTGCGCTCGGCCGACGGCAT
CGACATCGTGAAGCGGCTCGTGCGCGACGCCGACGTGTTCGTCGAGAGCTTCAAGCCGGGTGTGCTCGAGCAGATGGGGC
TCGGGCCGGACGTGCTGCTCGAGTTGCGCCCGTCGCTCGTGATCGCGCGCATTTCGGGCTGGGGGCAGACAGGCCCGTAT
CGGCACAAGCCGGGCTTCGGCACGCTGGCCGAGGGGTACGCGGGCTTCGCGTCGATCAACGGCTTCGCCGATCGCGAGCC
GGTGCTGCCGCCGATGTTTCTCGGCGACATGACGGCCGGGCTGTCCGGCGCGATCGCGGTGCTGGTGGCGCTGCACGCGT
GCCGCGACGGCGCGCGCGGGCAGGTGATCGACGTCTCGCTGTTCGAGCCGCTGTTCTCGATTCTCGGGCCGGCCGCCGCG
AACTACGTGCTGACGGGGCGCGTGAAGGAGCGCACCGGCAGCCGCTCGTCGAACACCGCGCCGCGCAACGCATACCGCAC
GCGCGACGACAAATGGCTGTGCCTGTCGAGCTCGACGCAGGGCATGGCGGAGCGGCTGTTTCGCGCGATCGGCCGCGCGG
ACCTGATCGACGATCCGCGCTACGCGACGAACGTGCAGCGCGTGCAGCACGCGGGCGAGCTCGATGCGATCGTCGGCGCG
TTCGTCGCCGCGCGCGATCTGGCCGACAATCTCGCGTTCTTCGAGAAGACCGGCGTGACGGTCGGGCCGATCCTCGATAT
CGCGCAGATCGTTCAGGATCACTATGTGATCGAGCGCGAGGCGCTCGTCGAGCTGCCCGACGACGACGTCGGCAGCTTGC
CGATGCATGGCGTCGTGCCGCGCCTGTCCGGCACGCCGGGCGGTTTCAGGCGCGCCGCGCCGAAGCTCGGCGAGCATAAC
CGCGAGGTTCTGTTGCCGTTGCTCGGCGCGCACGAGTATGCGCGGCTCGCCCGCAACGGCGTGATTCGGCCGGAGTGA

Upstream 100 bases:

>100_bases
GATCTGTTCGGCGCGGCGCACGAATGACGTGAGGACGGCGGGCTCCGGCATGCGCCCGGGCGCCGGCCGGTGACGCAACG
GATTCGATTCGGGGGCAACG

Downstream 100 bases:

>100_bases
GGCCGCTTGCCGCGCATCGCATCGCGCACGCGGCGTGATGCGATGCGATCGAGGAGACGTATCGATGGAACGAAGATGGA
AGCGCCGCCCGGCGGGAGCG

Product: Acyl-CoA transferase/carnitine dehydratase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MDVRQTQVEERASPRRRADTGPIHAKRFDADARGPLAGVRVVDLSRLMAGNMLSLQLADFGADVVKVENERGDTLRAVGA
GGVSTNWKVYGRNKRSVCVDLRSADGIDIVKRLVRDADVFVESFKPGVLEQMGLGPDVLLELRPSLVIARISGWGQTGPY
RHKPGFGTLAEGYAGFASINGFADREPVLPPMFLGDMTAGLSGAIAVLVALHACRDGARGQVIDVSLFEPLFSILGPAAA
NYVLTGRVKERTGSRSSNTAPRNAYRTRDDKWLCLSSSTQGMAERLFRAIGRADLIDDPRYATNVQRVQHAGELDAIVGA
FVAARDLADNLAFFEKTGVTVGPILDIAQIVQDHYVIEREALVELPDDDVGSLPMHGVVPRLSGTPGGFRRAAPKLGEHN
REVLLPLLGAHEYARLARNGVIRPE

Sequences:

>Translated_425_residues
MDVRQTQVEERASPRRRADTGPIHAKRFDADARGPLAGVRVVDLSRLMAGNMLSLQLADFGADVVKVENERGDTLRAVGA
GGVSTNWKVYGRNKRSVCVDLRSADGIDIVKRLVRDADVFVESFKPGVLEQMGLGPDVLLELRPSLVIARISGWGQTGPY
RHKPGFGTLAEGYAGFASINGFADREPVLPPMFLGDMTAGLSGAIAVLVALHACRDGARGQVIDVSLFEPLFSILGPAAA
NYVLTGRVKERTGSRSSNTAPRNAYRTRDDKWLCLSSSTQGMAERLFRAIGRADLIDDPRYATNVQRVQHAGELDAIVGA
FVAARDLADNLAFFEKTGVTVGPILDIAQIVQDHYVIEREALVELPDDDVGSLPMHGVVPRLSGTPGGFRRAAPKLGEHN
REVLLPLLGAHEYARLARNGVIRPE
>Mature_425_residues
MDVRQTQVEERASPRRRADTGPIHAKRFDADARGPLAGVRVVDLSRLMAGNMLSLQLADFGADVVKVENERGDTLRAVGA
GGVSTNWKVYGRNKRSVCVDLRSADGIDIVKRLVRDADVFVESFKPGVLEQMGLGPDVLLELRPSLVIARISGWGQTGPY
RHKPGFGTLAEGYAGFASINGFADREPVLPPMFLGDMTAGLSGAIAVLVALHACRDGARGQVIDVSLFEPLFSILGPAAA
NYVLTGRVKERTGSRSSNTAPRNAYRTRDDKWLCLSSSTQGMAERLFRAIGRADLIDDPRYATNVQRVQHAGELDAIVGA
FVAARDLADNLAFFEKTGVTVGPILDIAQIVQDHYVIEREALVELPDDDVGSLPMHGVVPRLSGTPGGFRRAAPKLGEHN
REVLLPLLGAHEYARLARNGVIRPE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=384, Percent_Identity=30.7291666666667, Blast_Score=194, Evalue=2e-49,
Organism=Homo sapiens, GI300863124, Length=410, Percent_Identity=29.0243902439024, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863126, Length=384, Percent_Identity=27.8645833333333, Blast_Score=158, Evalue=9e-39,
Organism=Homo sapiens, GI13376042, Length=410, Percent_Identity=25.1219512195122, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=29.3193717277487, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI42794625, Length=382, Percent_Identity=29.3193717277487, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458393, Length=284, Percent_Identity=30.9859154929577, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI266458397, Length=197, Percent_Identity=35.0253807106599, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI266458395, Length=127, Percent_Identity=39.3700787401575, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI42822893, Length=127, Percent_Identity=39.3700787401575, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=360, Percent_Identity=28.0555555555556, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1788717, Length=435, Percent_Identity=25.2873563218391, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1786222, Length=382, Percent_Identity=24.6073298429319, Blast_Score=116, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI115535051, Length=367, Percent_Identity=26.7029972752044, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=335, Percent_Identity=25.3731343283582, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24648431, Length=405, Percent_Identity=32.3456790123457, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24585488, Length=369, Percent_Identity=27.6422764227642, Blast_Score=114, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45959; Mature: 45959

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVRQTQVEERASPRRRADTGPIHAKRFDADARGPLAGVRVVDLSRLMAGNMLSLQLADF
CCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHC
GADVVKVENERGDTLRAVGAGGVSTNWKVYGRNKRSVCVDLRSADGIDIVKRLVRDADVF
CCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
VESFKPGVLEQMGLGPDVLLELRPSLVIARISGWGQTGPYRHKPGFGTLAEGYAGFASIN
HHHCCCCHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHCC
GFADREPVLPPMFLGDMTAGLSGAIAVLVALHACRDGARGQVIDVSLFEPLFSILGPAAA
CCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCHHHC
NYVLTGRVKERTGSRSSNTAPRNAYRTRDDKWLCLSSSTQGMAERLFRAIGRADLIDDPR
CEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCH
YATNVQRVQHAGELDAIVGAFVAARDLADNLAFFEKTGVTVGPILDIAQIVQDHYVIERE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALVELPDDDVGSLPMHGVVPRLSGTPGGFRRAAPKLGEHNREVLLPLLGAHEYARLARNG
HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHCHHHHHHHHHCC
VIRPE
CCCCC
>Mature Secondary Structure
MDVRQTQVEERASPRRRADTGPIHAKRFDADARGPLAGVRVVDLSRLMAGNMLSLQLADF
CCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHC
GADVVKVENERGDTLRAVGAGGVSTNWKVYGRNKRSVCVDLRSADGIDIVKRLVRDADVF
CCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
VESFKPGVLEQMGLGPDVLLELRPSLVIARISGWGQTGPYRHKPGFGTLAEGYAGFASIN
HHHCCCCHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHCC
GFADREPVLPPMFLGDMTAGLSGAIAVLVALHACRDGARGQVIDVSLFEPLFSILGPAAA
CCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCHHHC
NYVLTGRVKERTGSRSSNTAPRNAYRTRDDKWLCLSSSTQGMAERLFRAIGRADLIDDPR
CEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCH
YATNVQRVQHAGELDAIVGAFVAARDLADNLAFFEKTGVTVGPILDIAQIVQDHYVIERE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALVELPDDDVGSLPMHGVVPRLSGTPGGFRRAAPKLGEHNREVLLPLLGAHEYARLARNG
HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHCHHHHHHHHHCC
VIRPE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]