| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is 53723073
Identifier: 53723073
GI number: 53723073
Start: 2787212
End: 2789416
Strand: Reverse
Name: 53723073
Synonym: BPSS2056
Alternate gene names: NA
Gene position: 2789416-2787212 (Counterclockwise)
Preceding gene: 53723074
Following gene: 53723072
Centisome position: 87.91
GC content: 64.22
Gene sequence:
>2205_bases GTGAGTCGCGTATTCACACTCGACAGCCCGCACGGCGACGGCCTGAAATTCCACACGCTCGACGGCAGCGACGAGCTTGG CCGGCTGTTCGAATTCCGGATCGAGGCGCTCGCCGACAGTCACAGCCTGTCGCTGAAGGACCTGCTCGGCAAGCCCGTCA CCGTCCGGATCGAACAGCAGGGCCAGTCGACGCGCTACCTGAACGGCATCGTTGCGCGCGCATCGCTTGCCGGCCGGCGT GCCGAGCGGTACTACGGCTACGAGCTGCTCGTGCGGCCATGGCTGTGGCTCGCGACGCGTCGCTCCGATTGCCGGATATT CCAGAACAAGACCGTGCCCGAGATCGTGCAGGAGGTGCTGTCGACGTACGGCTTTCCGATCGAGAACCACCTCGCCGAAT CGTATGTGCCGCGCGAGTATTGCGTGCAGTACAACGGGACCGATGCCGCGTTCGTGTCGCGGCTGATGGAATTCGAGGGC ATCTACTACTGGTTCCGGCATGCCGAGGACACGCATACGCTGATGCTGAGCGACGCGATGTCGTCGCATACGGCGCTGCC CGGCTACGAAACGATTCCGTACATCGCGCGCGACCGCACCGTGATCGCCGACGTGGAACATATCGACGGCTGGCTGCCCG CGCGGCAGGTGAGCGTCGGCAAGCATCAGACCACCGACTACGACTACACGAAACCACGCGCCGATCTGTCGTCGCAGAAG GTCGATCCGCGCGGCCACGATCACGACAGCTTCGCGTCGTTCGAATGGCAGGGCGGCTATCGCGACGATGCGCCCGGCGC GCACTACAGCCGCGTGCGGCTCGAAGAACAGCAGGCCGAGCACGAACGCGCGAGCGCCGATACGGATGTGCGCGGCGCCG CGCCGGGGTATCTGTTCACGCTCGCGCATTGCCCGCGCGCCGACCGGAACCGCGAATACCTGATCGTGCGGTGCCAGTAC CGTTTTCAGGAGAACGCCTATGCGAGCGATCAGGGCACGGAGGCTGTGGTGCATCAGACGATGATGCTCGTGCGGCCGTC GAGTTTGCCTTATCGGCCGCCGCGTGAGACGCCGAGACCGCGGACCAACGAGCCGCAGACGGCGACCGTTGTCGGGCCGC CCGGTGAGGAAATCTGGACCGATCAGTACGGGCGCGTGAAGCTGCAGTTTCGCTGGGACAGGTATGGGCAGAGCAACCAG GATTCGTCGTGCTGGGTGCGGGTGTCGAGCCCGTGGGCCGGCGGTGGATTCGGAGGCGTGCAGATTCCGCGTGTGGGCGA CGAGGTCGTGGTCGATTTTCTGAATGGCGATCCGGACGAGCCGATCGTGACCGGGCGGGTTTACAACGGCGAGAAGATGC CGCCGTGGGGGCTGCCGGAGAGTGCGACGCAGAGCGGGCTGTTGTCGCGGTCGTCGCCGGGCGGGACGACCGAGCACGCG AACGCGTTCCGGTTCGAGGACAAGAAGGGCGCGGAGCAGCTGTGGATGCATGCGGAACGGAATTTCGACGCGGAGACGGA GGCCGATCATTCGCTTTCCATCGAGCACGACCACACGCATACGGTCGGCAACGACGAAACGATGCAGGTGAGGAACAACC GGCAACGCAGCGTCGGGCAGGGCGAGACGGTGAACATCGGGCGGCATCGGGTCGCGCAGATCAAGGGGAATGAGACGCAG GGGGTGGTGGGGGATCGCACGCGCACGGTCGGGAAGAAGGAGACCGTGACGATCGTGTCGGATCGCGAGGCGACGATCGG CGGCAATCACATGGAGACGGTCGTGAAAGACAAGACCGAATCGATCGGCGAGGGCAAGACGCTGAATGTCGTCAAGCACT ATCAGACGAATTCGAAAAGCATGAAGACGACGGTCGCTGAACATCATGTGGAGGAGATCGGTGAGCGGACGTCGACGATT GCACACGCGCATAAGCTCACGGTCCGCGGCGAACACGCCGTCAGCGTCGGCGCAAACCACACGACGAACGTGCAGCATCA GGTGCTCGTCAATGCCGGCGACCAGCGTGCGCTCGTGTGCGGGAAGTCGAGCGTCCTGATGAAGAGCGACGGCACGATCC TGATCCAGGGTGTCAACGTCGAATCAAGCGGCTCCGACAGCCACAGCGTGCGCGGCAAGAAGGTCACGACATCGGCGTCG GTCGAGCATACGGTCGAAGGGACCGTGTTGAAGCTGAATCCGTAA
Upstream 100 bases:
>100_bases CGACGATCGAAGGCCGCACAATGTTTGCTGTCAAGGTGGGCGCAGCCGACCGGTGGTTCGTGTACTGGTTTGTTGACCAG TCCGACGAGGAGGCAACGAC
Downstream 100 bases:
>100_bases CGGGGGCTTGAGCGTATGCAGAACTGGCAGCCGACGAATCCGGTGGAGCGCAGGTTCATGGACGCACACGCGGACTGGAT GCGTTTCGCGAAAGATCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Rhs Element Vgr Protein; VgrG Protein; Rhs-Family Protein; Rhs Family Protein; Rhs Element Vgr Family Protein; Rhs Accessory Genetic Element; VgrG Family T6SS G; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element Vgr Family; Vgr-Related Protein; Rhs Element Vgr ProteinGp5-Like; VgrG-Like Protein; Type VI Secretion System VgrG Family Protein; Rhs Element Vgr Protein Subfamily; Rhs Element Protein; Type VI Secretion System Effector Protein VgrS; VrgG Protein; Rhs Protein; Rhs/Vgr-Family Protein; RHS Accessory Genetic Element; Vgr Protein; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 734; Mature: 733
Protein sequence:
>734_residues MSRVFTLDSPHGDGLKFHTLDGSDELGRLFEFRIEALADSHSLSLKDLLGKPVTVRIEQQGQSTRYLNGIVARASLAGRR AERYYGYELLVRPWLWLATRRSDCRIFQNKTVPEIVQEVLSTYGFPIENHLAESYVPREYCVQYNGTDAAFVSRLMEFEG IYYWFRHAEDTHTLMLSDAMSSHTALPGYETIPYIARDRTVIADVEHIDGWLPARQVSVGKHQTTDYDYTKPRADLSSQK VDPRGHDHDSFASFEWQGGYRDDAPGAHYSRVRLEEQQAEHERASADTDVRGAAPGYLFTLAHCPRADRNREYLIVRCQY RFQENAYASDQGTEAVVHQTMMLVRPSSLPYRPPRETPRPRTNEPQTATVVGPPGEEIWTDQYGRVKLQFRWDRYGQSNQ DSSCWVRVSSPWAGGGFGGVQIPRVGDEVVVDFLNGDPDEPIVTGRVYNGEKMPPWGLPESATQSGLLSRSSPGGTTEHA NAFRFEDKKGAEQLWMHAERNFDAETEADHSLSIEHDHTHTVGNDETMQVRNNRQRSVGQGETVNIGRHRVAQIKGNETQ GVVGDRTRTVGKKETVTIVSDREATIGGNHMETVVKDKTESIGEGKTLNVVKHYQTNSKSMKTTVAEHHVEEIGERTSTI AHAHKLTVRGEHAVSVGANHTTNVQHQVLVNAGDQRALVCGKSSVLMKSDGTILIQGVNVESSGSDSHSVRGKKVTTSAS VEHTVEGTVLKLNP
Sequences:
>Translated_734_residues MSRVFTLDSPHGDGLKFHTLDGSDELGRLFEFRIEALADSHSLSLKDLLGKPVTVRIEQQGQSTRYLNGIVARASLAGRR AERYYGYELLVRPWLWLATRRSDCRIFQNKTVPEIVQEVLSTYGFPIENHLAESYVPREYCVQYNGTDAAFVSRLMEFEG IYYWFRHAEDTHTLMLSDAMSSHTALPGYETIPYIARDRTVIADVEHIDGWLPARQVSVGKHQTTDYDYTKPRADLSSQK VDPRGHDHDSFASFEWQGGYRDDAPGAHYSRVRLEEQQAEHERASADTDVRGAAPGYLFTLAHCPRADRNREYLIVRCQY RFQENAYASDQGTEAVVHQTMMLVRPSSLPYRPPRETPRPRTNEPQTATVVGPPGEEIWTDQYGRVKLQFRWDRYGQSNQ DSSCWVRVSSPWAGGGFGGVQIPRVGDEVVVDFLNGDPDEPIVTGRVYNGEKMPPWGLPESATQSGLLSRSSPGGTTEHA NAFRFEDKKGAEQLWMHAERNFDAETEADHSLSIEHDHTHTVGNDETMQVRNNRQRSVGQGETVNIGRHRVAQIKGNETQ GVVGDRTRTVGKKETVTIVSDREATIGGNHMETVVKDKTESIGEGKTLNVVKHYQTNSKSMKTTVAEHHVEEIGERTSTI AHAHKLTVRGEHAVSVGANHTTNVQHQVLVNAGDQRALVCGKSSVLMKSDGTILIQGVNVESSGSDSHSVRGKKVTTSAS VEHTVEGTVLKLNP >Mature_733_residues SRVFTLDSPHGDGLKFHTLDGSDELGRLFEFRIEALADSHSLSLKDLLGKPVTVRIEQQGQSTRYLNGIVARASLAGRRA ERYYGYELLVRPWLWLATRRSDCRIFQNKTVPEIVQEVLSTYGFPIENHLAESYVPREYCVQYNGTDAAFVSRLMEFEGI YYWFRHAEDTHTLMLSDAMSSHTALPGYETIPYIARDRTVIADVEHIDGWLPARQVSVGKHQTTDYDYTKPRADLSSQKV DPRGHDHDSFASFEWQGGYRDDAPGAHYSRVRLEEQQAEHERASADTDVRGAAPGYLFTLAHCPRADRNREYLIVRCQYR FQENAYASDQGTEAVVHQTMMLVRPSSLPYRPPRETPRPRTNEPQTATVVGPPGEEIWTDQYGRVKLQFRWDRYGQSNQD SSCWVRVSSPWAGGGFGGVQIPRVGDEVVVDFLNGDPDEPIVTGRVYNGEKMPPWGLPESATQSGLLSRSSPGGTTEHAN AFRFEDKKGAEQLWMHAERNFDAETEADHSLSIEHDHTHTVGNDETMQVRNNRQRSVGQGETVNIGRHRVAQIKGNETQG VVGDRTRTVGKKETVTIVSDREATIGGNHMETVVKDKTESIGEGKTLNVVKHYQTNSKSMKTTVAEHHVEEIGERTSTIA HAHKLTVRGEHAVSVGANHTTNVQHQVLVNAGDQRALVCGKSSVLMKSDGTILIQGVNVESSGSDSHSVRGKKVTTSASV EHTVEGTVLKLNP
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82013; Mature: 81882
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVFTLDSPHGDGLKFHTLDGSDELGRLFEFRIEALADSHSLSLKDLLGKPVTVRIEQQ CCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCC GQSTRYLNGIVARASLAGRRAERYYGYELLVRPWLWLATRRSDCRIFQNKTVPEIVQEVL CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHEECCCCCCEEECCCCHHHHHHHHH STYGFPIENHLAESYVPREYCVQYNGTDAAFVSRLMEFEGIYYWFRHAEDTHTLMLSDAM HHHCCCHHHHHHHHCCCHHHEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHH SSHTALPGYETIPYIARDRTVIADVEHIDGWLPARQVSVGKHQTTDYDYTKPRADLSSQK HCCCCCCCCCCCCEEECCCEEEEEHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC VDPRGHDHDSFASFEWQGGYRDDAPGAHYSRVRLEEQQAEHERASADTDVRGAAPGYLFT CCCCCCCCCCCCEEEECCCCCCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCCCCCCEEEE LAHCPRADRNREYLIVRCQYRFQENAYASDQGTEAVVHQTMMLVRPSSLPYRPPRETPRP EECCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCC RTNEPQTATVVGPPGEEIWTDQYGRVKLQFRWDRYGQSNQDSSCWVRVSSPWAGGGFGGV CCCCCCEEEEECCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCE QIPRVGDEVVVDFLNGDPDEPIVTGRVYNGEKMPPWGLPESATQSGLLSRSSPGGTTEHA ECCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC NAFRFEDKKGAEQLWMHAERNFDAETEADHSLSIEHDHTHTVGNDETMQVRNNRQRSVGQ CCEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCC GETVNIGRHRVAQIKGNETQGVVGDRTRTVGKKETVTIVSDREATIGGNHMETVVKDKTE CCEEECCCEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH SIGEGKTLNVVKHYQTNSKSMKTTVAEHHVEEIGERTSTIAHAHKLTVRGEHAVSVGANH HCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCCC TTNVQHQVLVNAGDQRALVCGKSSVLMKSDGTILIQGVNVESSGSDSHSVRGKKVTTSAS CCCCEEEEEEECCCCEEEEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCC VEHTVEGTVLKLNP CEEEECCEEEEECC >Mature Secondary Structure SRVFTLDSPHGDGLKFHTLDGSDELGRLFEFRIEALADSHSLSLKDLLGKPVTVRIEQQ CEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCC GQSTRYLNGIVARASLAGRRAERYYGYELLVRPWLWLATRRSDCRIFQNKTVPEIVQEVL CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHEECCCCCCEEECCCCHHHHHHHHH STYGFPIENHLAESYVPREYCVQYNGTDAAFVSRLMEFEGIYYWFRHAEDTHTLMLSDAM HHHCCCHHHHHHHHCCCHHHEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHH SSHTALPGYETIPYIARDRTVIADVEHIDGWLPARQVSVGKHQTTDYDYTKPRADLSSQK HCCCCCCCCCCCCEEECCCEEEEEHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC VDPRGHDHDSFASFEWQGGYRDDAPGAHYSRVRLEEQQAEHERASADTDVRGAAPGYLFT CCCCCCCCCCCCEEEECCCCCCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCCCCCCEEEE LAHCPRADRNREYLIVRCQYRFQENAYASDQGTEAVVHQTMMLVRPSSLPYRPPRETPRP EECCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCC RTNEPQTATVVGPPGEEIWTDQYGRVKLQFRWDRYGQSNQDSSCWVRVSSPWAGGGFGGV CCCCCCEEEEECCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCE QIPRVGDEVVVDFLNGDPDEPIVTGRVYNGEKMPPWGLPESATQSGLLSRSSPGGTTEHA ECCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC NAFRFEDKKGAEQLWMHAERNFDAETEADHSLSIEHDHTHTVGNDETMQVRNNRQRSVGQ CCEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCC GETVNIGRHRVAQIKGNETQGVVGDRTRTVGKKETVTIVSDREATIGGNHMETVVKDKTE CCEEECCCEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH SIGEGKTLNVVKHYQTNSKSMKTTVAEHHVEEIGERTSTIAHAHKLTVRGEHAVSVGANH HCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCCC TTNVQHQVLVNAGDQRALVCGKSSVLMKSDGTILIQGVNVESSGSDSHSVRGKKVTTSAS CCCCEEEEEEECCCCEEEEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCC VEHTVEGTVLKLNP CEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA