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The map label for this gene is ygeR [C]

Identifier: 53722767

GI number: 53722767

Start: 2396072

End: 2396836

Strand: Reverse

Name: ygeR [C]

Synonym: BPSS1746

Alternate gene names: 53722767

Gene position: 2396836-2396072 (Counterclockwise)

Preceding gene: 53722768

Following gene: 53722765

Centisome position: 75.54

GC content: 72.16

Gene sequence:

>765_bases
ATGGAGGTACGCTTGAGAAGCATTCTGTTCGTCCAACGCGCGGGCATCGGCCGGACGGTGCGCGCGGCGCTCGTCGCGGC
AGGCGCCGCGCTCGTCGGCGGTTGCACGGTGACGCCGTGGACCGACTCCTGGCAGCCGACGCACGTGCCGTCGCAGCCGG
CGCCGCGCGCGTCGTCCGGCGTGCCGGCCGGCTATTACCGCGTGAATTCGGGCGATACGCTGGCGAGCATCGCGTCCGCG
TTCGGCCAGCGCACGCTCGATATCGCGAGTTGGAACCACATGGCGCCAACCGACATGGTGATGCCCGGCCAAGTGCTGCG
CGTCGCGCCGCCGCCGAGCACGGCGACGTTCGCGCCGCCGCCTGCCGCCGAGCCGCAGCCGGAGGCGGCCGCCTCGGCGC
TCGCGTGGCCCGCGCACGGCACCGTGACGACGCCGTTCGGCGCCGGCAGGAATCATGGGATCGTGATCACGTCGACGGGC
GGCGACCGCACGGTGCGCGCCGCCGCGCCCGGCCGCGTCGTCTACGCGGGCACGGGCGTCGCCGCATATGGCCCGCTCGT
GATCCTGAAACACGAGAACGGCCTCATCACCGCGTACGGCCACAACGAGAAACTGCTCGTCAACGAAGGCGATGCGGTGA
GCGCGGGGCAGCCGGTTGCCGAGATGGCCACCGACGCGAGCGGCCGCTCGACCTTCGAATTCGAGGTGCGGCGTAACGGC
AAGGCCGTCGATCCGCTCGGCCTGCTGCCGCGCAACGGTTCCTGA

Upstream 100 bases:

>100_bases
TGACGCAGCCGAATCGGTGCGCCGCGGCCCGACGTTGTCGGGCCGATCGCGCACGAAAGTCCCGGCGGCGGTGAGCATGC
CGCCGCCGCGCAGTGAATTG

Downstream 100 bases:

>100_bases
GCGGCGTTCCGCGCCGCCTGTCTCGCCCGATGCGCGGCTGCGCAGCGCGCTCGCCGCGACACACTACGCGATGCCACGTC
ATGTCGCGGTGCCGAGCCGT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MEVRLRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASA
FGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTG
GDRTVRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNG
KAVDPLGLLPRNGS

Sequences:

>Translated_254_residues
MEVRLRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASA
FGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTG
GDRTVRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNG
KAVDPLGLLPRNGS
>Mature_254_residues
MEVRLRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSGVPAGYYRVNSGDTLASIASA
FGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPPPAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTG
GDRTVRAAAPGRVVYAGTGVAAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNG
KAVDPLGLLPRNGS

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=207, Percent_Identity=32.8502415458937, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=43.2203389830509, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=37.0689655172414, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26161; Mature: 26161

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRLRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSG
CCEEHEEEEEEHHCCCCHHHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCC
VPAGYYRVNSGDTLASIASAFGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPP
CCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCC
PAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRTVRAAAPGRVVYAGTGV
CCCCCCCHHHHHHEECCCCCCEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCC
AAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNG
CCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEEECCC
KAVDPLGLLPRNGS
CCCCCCCCCCCCCC
>Mature Secondary Structure
MEVRLRSILFVQRAGIGRTVRAALVAAGAALVGGCTVTPWTDSWQPTHVPSQPAPRASSG
CCEEHEEEEEEHHCCCCHHHHHHHHHHCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCC
VPAGYYRVNSGDTLASIASAFGQRTLDIASWNHMAPTDMVMPGQVLRVAPPPSTATFAPP
CCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCC
PAAEPQPEAAASALAWPAHGTVTTPFGAGRNHGIVITSTGGDRTVRAAAPGRVVYAGTGV
CCCCCCCHHHHHHEECCCCCCEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCC
AAYGPLVILKHENGLITAYGHNEKLLVNEGDAVSAGQPVAEMATDASGRSTFEFEVRRNG
CCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEEECCC
KAVDPLGLLPRNGS
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]