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The map label for this gene is sdhC [H]

Identifier: 53722741

GI number: 53722741

Start: 2358929

End: 2359345

Strand: Reverse

Name: sdhC [H]

Synonym: BPSS1720

Alternate gene names: 53722741

Gene position: 2359345-2358929 (Counterclockwise)

Preceding gene: 53722742

Following gene: 53722740

Centisome position: 74.36

GC content: 58.03

Gene sequence:

>417_bases
ATGTCTGAAACAGTAAGAAAACCGAGGCCGGAGTACCGGAACATCGGGTTCGGCGACATCACGCTCAAATACCGTATGCC
GCTCGCGGCTCGGGTTTCGATTCTGCACCGGGTCAGCGGCGCCCTGCTGTTCCTGTTCCTTCCTTTCCTGCTGTACCTCT
TCGACCAGAGCCTCACGTCCGAGCTGAGCTTCGAAGTATTCAAGGCCTTCCTCTCCAACATCATCGTCAAGCTGATCGTC
CTCGCGCTGTCGTGGGCGTTCCTGTTCCACTTCTGCGCCGGCATCCGCCATCTGATGATGGACATGAACCACGACGCGGT
GTCGAAGGAACGCGGCAAGAAGACGTCGGTCGTCGTGTTCGCGGTGTCGACCCTTCTCACGATCGCCGTCGCGCTCAAAC
TGTTCGGAGCATTCTAA

Upstream 100 bases:

>100_bases
ACCGTGAATTGCAACGCTCCAGAGCAGAGCTTTCGCTGCAGCGCGAAATAAAAAGGCGCTAAAATCACGGATTAGTGTGA
CAACATCGTAGGGGTCTAGC

Downstream 100 bases:

>100_bases
GAAAATGGCAGCGAATAACCGTATCGGCTCGAAGCGCCTCGTCGTCGGCGCACACTATGGTCTGCGCGACTGGCTGGCGC
AGCGCGTCACCGCGAGCGTG

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIV
LALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF

Sequences:

>Translated_138_residues
MSETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIV
LALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF
>Mature_137_residues
SETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVL
ALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVALKLFGAF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=128, Percent_Identity=35.15625, Blast_Score=76, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15646; Mature: 15515

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTS
CCCCCCCCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
AVSTLLTIAVALKLFGAF
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTS
CCCCCCCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
AVSTLLTIAVALKLFGAF
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]