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The map label for this gene is sdsB [H]

Identifier: 53722609

GI number: 53722609

Start: 2157837

End: 2158751

Strand: Reverse

Name: sdsB [H]

Synonym: BPSS1586

Alternate gene names: 53722609

Gene position: 2158751-2157837 (Counterclockwise)

Preceding gene: 53722615

Following gene: 53722608

Centisome position: 68.03

GC content: 70.71

Gene sequence:

>915_bases
ATGCTCGGCACCCTGACGGACCTGGACCTTCGGCTGATCCGCGTGTTCGTCGCGGTGGCGGACGCGGGCGGCGTGAGCGC
CGCGCAAGCGACGCTGAACGTGAGCCAGCCGACGATCAGCACGCAACTGGCGACGCTCGAGACGCGCGTCGGCTTCCGGC
TGTGCGAGCGCGGGCGCAGCGGCTTTCGGCTGACGACGAAGGGCGAGCGCTTCTACGCGCTCGCGAAGAAGCTGTACGCG
GCCGTCGACGCATTCACGGGCGAAGCGCGGCACATGGACAAGACGCTCGTCGGCACGCTCGCGATCGGCCTCATCGGCCA
CACGCCGATCAGCGCGAACGCGCGCGTGAGCGAGGCGATCGCGCGCTTTCGGCGGCGCGACGAGGCGGTGCGCTTCGTGA
TCTCGGTGCGGCCGCCGGGCGATCTCGAGGAACGGCTGCTGAGCGGCGACGTGCAGATCGCGATCGGCTATTTCTGGCAT
CGCGTGCCGGCGCTCGAGTACGCGCCGCTCTTCGTCGAGCGTCAGCTCGCGTACTGCGGGCGCGGCCATCCGCTGTTCGC
GCGGGCGGGGCGGCTCGCCGCGGCCCGCGTCGCGGCTTTCGAATGGGCGTGGCGAACCTATCCGTCGCCGGAGGTGGCGC
TGTCGACGACACCCGCGAACGTCACCGCGCACGCCGACAACATGGAGGCCATCGCGCTGCTGATCCTGTCCGGTCACCAT
CTCGGCTATCTGCCGCGGCATTTCGCGGCGCCTTACGTGGAGCAGGGGCTGCTCAAGGCGCTGAATCCCGCCACGCTGTG
CTACGACGTGACGTTCGACGTGGTCACGCGGCGCGGCGCCCGGCGCGATCCGATCGTGCAGGCGTTTCTCGACGATCTGA
CGCATGCGCACCGCGGCGGCGCGGCGCAGGCGTGA

Upstream 100 bases:

>100_bases
CGCCAGAATGGCGACTTGAATCCCGAAGTTCGAACGTTCACATTGATATGTGTCGATGTATCGGCGGTGCGCGCGACGGA
GACGACAGGCTGGAGAAGAC

Downstream 100 bases:

>100_bases
CGCGTGACGCGCGATGCGCGATGCGCGATGCGCGCGCGCCCGCCGGCGCCGGGCATCGGACGAGATGCGCGGGGCGATGC
GCGCGGCATCCGCGCGGTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLGTLTDLDLRLIRVFVAVADAGGVSAAQATLNVSQPTISTQLATLETRVGFRLCERGRSGFRLTTKGERFYALAKKLYA
AVDAFTGEARHMDKTLVGTLAIGLIGHTPISANARVSEAIARFRRRDEAVRFVISVRPPGDLEERLLSGDVQIAIGYFWH
RVPALEYAPLFVERQLAYCGRGHPLFARAGRLAAARVAAFEWAWRTYPSPEVALSTTPANVTAHADNMEAIALLILSGHH
LGYLPRHFAAPYVEQGLLKALNPATLCYDVTFDVVTRRGARRDPIVQAFLDDLTHAHRGGAAQA

Sequences:

>Translated_304_residues
MLGTLTDLDLRLIRVFVAVADAGGVSAAQATLNVSQPTISTQLATLETRVGFRLCERGRSGFRLTTKGERFYALAKKLYA
AVDAFTGEARHMDKTLVGTLAIGLIGHTPISANARVSEAIARFRRRDEAVRFVISVRPPGDLEERLLSGDVQIAIGYFWH
RVPALEYAPLFVERQLAYCGRGHPLFARAGRLAAARVAAFEWAWRTYPSPEVALSTTPANVTAHADNMEAIALLILSGHH
LGYLPRHFAAPYVEQGLLKALNPATLCYDVTFDVVTRRGARRDPIVQAFLDDLTHAHRGGAAQA
>Mature_304_residues
MLGTLTDLDLRLIRVFVAVADAGGVSAAQATLNVSQPTISTQLATLETRVGFRLCERGRSGFRLTTKGERFYALAKKLYA
AVDAFTGEARHMDKTLVGTLAIGLIGHTPISANARVSEAIARFRRRDEAVRFVISVRPPGDLEERLLSGDVQIAIGYFWH
RVPALEYAPLFVERQLAYCGRGHPLFARAGRLAAARVAAFEWAWRTYPSPEVALSTTPANVTAHADNMEAIALLILSGHH
LGYLPRHFAAPYVEQGLLKALNPATLCYDVTFDVVTRRGARRDPIVQAFLDDLTHAHRGGAAQA

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787806, Length=301, Percent_Identity=24.2524916943522, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=298, Percent_Identity=23.489932885906, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33214; Mature: 33214

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTLTDLDLRLIRVFVAVADAGGVSAAQATLNVSQPTISTQLATLETRVGFRLCERGRS
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
GFRLTTKGERFYALAKKLYAAVDAFTGEARHMDKTLVGTLAIGLIGHTPISANARVSEAI
CCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ARFRRRDEAVRFVISVRPPGDLEERLLSGDVQIAIGYFWHRVPALEYAPLFVERQLAYCG
HHHHHHCCEEEEEEEECCCCCHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHC
RGHPLFARAGRLAAARVAAFEWAWRTYPSPEVALSTTPANVTAHADNMEAIALLILSGHH
CCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCHHEEEEEEECCCC
LGYLPRHFAAPYVEQGLLKALNPATLCYDVTFDVVTRRGARRDPIVQAFLDDLTHAHRGG
CCCCHHHHCCHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
AAQA
CCCC
>Mature Secondary Structure
MLGTLTDLDLRLIRVFVAVADAGGVSAAQATLNVSQPTISTQLATLETRVGFRLCERGRS
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
GFRLTTKGERFYALAKKLYAAVDAFTGEARHMDKTLVGTLAIGLIGHTPISANARVSEAI
CCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ARFRRRDEAVRFVISVRPPGDLEERLLSGDVQIAIGYFWHRVPALEYAPLFVERQLAYCG
HHHHHHCCEEEEEEEECCCCCHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHC
RGHPLFARAGRLAAARVAAFEWAWRTYPSPEVALSTTPANVTAHADNMEAIALLILSGHH
CCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCHHEEEEEEECCCC
LGYLPRHFAAPYVEQGLLKALNPATLCYDVTFDVVTRRGARRDPIVQAFLDDLTHAHRGG
CCCCHHHHCCHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
AAQA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]