Click here to switch to the map view.

The map label for this gene is sctT

Identifier: 53722419

GI number: 53722419

Start: 1907166

End: 1907984

Strand: Reverse

Name: sctT

Synonym: BPSS1392

Alternate gene names: 53722419

Gene position: 1907984-1907166 (Counterclockwise)

Preceding gene: 53722420

Following gene: 53722418

Centisome position: 60.13

GC content: 61.9

Gene sequence:

>819_bases
TTGACGCCTGCGCTTTTTGCTTTGCAGGGTTGGGCCGGCGCGCTGCTCGATGATGTCACGCTGCTCGCCATCTGCTCGGT
TCGCCTCTATATCGTGATGTCCGTTTTCCCGCCGACGGCTGACGGGCTGTCGCAAGGCGTCGTGCGCAATGCGCTCGTGA
TCTTGTTCGGTTCGTACGTCGCGTACGGACAACCGGCGGGGTTCGTGCAGACGCTGCACGGCACGCCGCTGATCGTGACC
GGCTTGCGAGAGGCCGTGATCGGCGTCGTCCTCGGTATTGCCGCGTCCACGGTGTTCTGGGCGATCGAAGGCGCAGGTTG
TTATATCGACGATCTGACGGGATACAACAACGTGCAGATGACGAATCCCGCGCGTGGGGAGCAGTCGACGCCGACGGCGA
CGCTGCTCACGCAGGTCGCGACGGTCGCGTTCTGGACGTTCGGGGGAATGACCTTCCTGCTCGGTACGCTATACGAATCG
TATCGATGGTGGCCGATCACGCTGACCTTCCCCCGGATGCCGGCATTGATCGAGGCGTTCGCCGTGAGTCAGACCGACAG
CTTGATGCAAATGGTCACGAAGCTCGCCGCGCCGATGATGCTGGTTCTTCTGCTGATCGATTTCGCCTTCGGATTCGCCG
CGAAGTCTGCTTCGAAGCTCGATCTCATGGGGTTGAGTCAGCCTGTCAAGGGCGCGGTGACGGTGCTGATGCTCGCATTG
TTCGTCGGTACGTTCGTCGATCAAGCGCGCGAGCAGGTGACGCTGTCGACGCTATCGAAACAGCTGCGCGAGTGGTCGCA
CGCCATGTCGCGCGGCTGA

Upstream 100 bases:

>100_bases
AGCAGATTCGCCGGCATGGTGAGCGGGCGGCCGACGAGGCGCTCGACGAGGAAATGGAAGAAGCCGCGCTCGGCGCGCGC
ATGCGGAACAGGGGGGCAGC

Downstream 100 bases:

>100_bases
CGGGCAAGCGGCGGCGTATGCGTTTCGCGGTCCGAAGCATGAATGGTTAAATATTTTCAGCTTTATCCGATATTCAGAGA
AGTTGAGAATCCGCCTGTTT

Product: type III secretion-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVAYGQPAGFVQTLHGTPLIVT
GLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYES
YRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLAL
FVGTFVDQAREQVTLSTLSKQLREWSHAMSRG

Sequences:

>Translated_272_residues
MTPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVAYGQPAGFVQTLHGTPLIVT
GLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYES
YRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLAL
FVGTFVDQAREQVTLSTLSKQLREWSHAMSRG
>Mature_271_residues
TPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVAYGQPAGFVQTLHGTPLIVTG
LREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESY
RWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLALF
VGTFVDQAREQVTLSTLSKQLREWSHAMSRG

Specific function: Component of the yop secretion machinery [H]

COG id: COG4791

COG function: function code U; Type III secretory pathway, component EscT

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002010
- InterPro:   IPR006304 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29260; Mature: 29129

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYGQPAGFVQTLHGTPLIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQM
HCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEE
TNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPRMPALIEAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
AVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLAL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHH
FVGTFVDQAREQVTLSTLSKQLREWSHAMSRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYGQPAGFVQTLHGTPLIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQM
HCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEE
TNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPRMPALIEAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
AVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLAL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHH
FVGTFVDQAREQVTLSTLSKQLREWSHAMSRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]