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The map label for this gene is soxD

Identifier: 53722394

GI number: 53722394

Start: 1872485

End: 1872775

Strand: Reverse

Name: soxD

Synonym: BPSS1368

Alternate gene names: 53722394

Gene position: 1872775-1872485 (Counterclockwise)

Preceding gene: 53722395

Following gene: 53722393

Centisome position: 59.02

GC content: 64.6

Gene sequence:

>291_bases
TTGCTGATCGAATGTCCGTGGTGCGGTCCGCGCGCCGAATCCGAGTTCAGCTGCGGCGGCGAAGCCGACATCGCGCGCCC
GCTCGATACCGACAAGCTGTCCGACCGCGAATGGGGCGACTACGTGTTCATGCGCAAGAACCCGCGCGGCAAGCATCGCG
AGCAGTGGCTGCACACGCAAGGCTGCCGCCGCTGGTTCGTCGCGCAACGCGACACCGTCACCTATGAATTCCAGGGCTAC
GAAACATTCGGCACGCCCGCCGCCCACGCAGCAAAGGACACGAGCAAATGA

Upstream 100 bases:

>100_bases
AGAGTAAGCGCTAAAGCGCTAACTCTGGTCGACCGCGAAGCATGGGACCAGAGTAAGCGCTAAAGCGCTAACTCTGGTCG
ACAGAGGAGAACGAAACATG

Downstream 100 bases:

>100_bases
GCCAGAAAGACCGACTCGGCGCAGGCGGGCGCATCAACCGCGCACAGCCGCTCACCTTCACGTTCAACGGCCGCACGTAT
CAGGGCTTCCAGGGCGACAC

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MLIECPWCGPRAESEFSCGGEADIARPLDTDKLSDREWGDYVFMRKNPRGKHREQWLHTQGCRRWFVAQRDTVTYEFQGY
ETFGTPAAHAAKDTSK

Sequences:

>Translated_96_residues
MLIECPWCGPRAESEFSCGGEADIARPLDTDKLSDREWGDYVFMRKNPRGKHREQWLHTQGCRRWFVAQRDTVTYEFQGY
ETFGTPAAHAAKDTSK
>Mature_96_residues
MLIECPWCGPRAESEFSCGGEADIARPLDTDKLSDREWGDYVFMRKNPRGKHREQWLHTQGCRRWFVAQRDTVTYEFQGY
ETFGTPAAHAAKDTSK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11129; Mature: 11129

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIECPWCGPRAESEFSCGGEADIARPLDTDKLSDREWGDYVFMRKNPRGKHREQWLHTQ
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
GCRRWFVAQRDTVTYEFQGYETFGTPAAHAAKDTSK
HHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIECPWCGPRAESEFSCGGEADIARPLDTDKLSDREWGDYVFMRKNPRGKHREQWLHTQ
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
GCRRWFVAQRDTVTYEFQGYETFGTPAAHAAKDTSK
HHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]