| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is 53722131
Identifier: 53722131
GI number: 53722131
Start: 1481559
End: 1482989
Strand: Reverse
Name: 53722131
Synonym: BPSS1103
Alternate gene names: NA
Gene position: 1482989-1481559 (Counterclockwise)
Preceding gene: 53722132
Following gene: 53722129
Centisome position: 46.74
GC content: 70.16
Gene sequence:
>1431_bases ATGCGTCGCCTCTTGTGCTGCTTCACGATCGTTCTGGGCTTCCTGTTCGCCGCGCCGTCGCACGCGGGCGACGCGGCCGC CGTTGGGCAACTGACGGTGGCGCTGTATCCGTGGGTGCCGCGCGTCGACCAGTTCAAGCGCGCGATCGAAACCGAATGGA AGAAGGCGCAGCCGGGCGTCGCGCTGCGGTTCGTGTCCGCGGACGCGTGGGACGGCGGCTACCGGAACGATCCGCCCGCG AGCGCCGACGTCTACGTGTACGACGCGATCTTCCTCGACTATTTCCGCAGCCAGAACTGGCTCGAGCCGCTCGCGGCGGA CGAGATCCAGCACATCGACGATTTCCTGCCGTACGCGATCCAGGGCGTGAAGGCGGGCGACCGGTACTACAGCATCCCGC AGCTCGGCTGCGCGAACGTGCTGTTCTACCGGAAGGACGACGCGGCGCTCGCGGCCGCGACGACGCTCACGCAGGTGCGC GGCGCGCTCGAGCAATGCACGTTCACGAGCGAGATCCCGCCGGACAGGCGCGGGCTGATGGTCGACATGTCCGGGCGCAC GACGAACGCCGCGCTCTATCTGGACGCCGCGCACAGCCGCACGGGCGCATACCCGCTGCCGCTGCCGTGGAACGCGAACG ACCTGAACGGCGAAGCGCTCGGCAGCCTGCGCGCGCTGATGGCGATGTCGAGCTGGCCGAACGCGACAGCCGAGCTGCCG GGCCAGTACGATCGCTCGGTATGGTTCAGCGACGGCGAAGGGCGCGCGGTGATCGGCTATTCGGAATCGATGTCGGCGAT GAGCGAGGCGGCGCGGCGCGATCTCGACTTCAAGTTCCTGCCGCTGTCGGACACGCCGCAGCCGCCGCTCTTCTACGCGG ACGTGATCGGCGTGAACACGACGACCCACGCGCGCGGCACGCGCGCGCTCGCGGTGCAACTCGCGAACGTGATCGCCGCA TCGTCGACGATGGTGCAAAGCGTCGGGCCGGACGGCAGCGGCGTGCCGCAATATCTGTTCTCCGCGCGGCGCAGCGTGCT GCACACGCTCGCGCAGCGCTATCCGCTCTATCGGAAGATGGTCGCGCTGCTGGATGCGCGCGAGCCGGTGATGTTCAAGA TCGATGCGCAGTCGCGCAACTGGCTCGCCTCGATGAGCGGGCCGATCGCGCAGCGCGCGCGCGCCGATTACCCGTGCGGC TGCGATATCGACACCGCGCTGCCGATCGCCGACTATCGCGGCGCGCAGGCCGTGTGCCCGACCGTCTGCGCGGCGCAGGG CGGCTGGAACGGCCAGTGGACCAATCAGTCTCCCGCGGCGCCCGCCGGGCAGTCGGCGTGCGGCTGCAACGCGTGCCCGA CGTCAGCCGCGGCGAAACTGCCGCGCGCGCTCGCCACCCGCGCCGCGCCCGGCGATCGCGCGAAGCCGTGA
Upstream 100 bases:
>100_bases TATGGAACTGACGCCCGCGCCGCGCGCCGGCATGCGCGCGCATCGACAAACACCAAGACAAGCGCATCGTTTCGCACGCG TCATTCGACAAGGAACCATC
Downstream 100 bases:
>100_bases CACGGGCGGCGCCCGGCCTCGCCGCGGGCGGGCCGGGAGCCCGGCCCGCGAGGCCCGCGCCGCGCCCGAATCGCCTCGCG CGCGGTCGAACGCGGTTGCG
Product: periplasmic thiamine binding protein
Products: NA
Alternate protein names: Thiaminase I; Thiamine pyridinylase [H]
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGVALRFVSADAWDGGYRNDPPA SADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAIQGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVR GALEQCTFTSEIPPDRRGLMVDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELP GQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNTTTHARGTRALAVQLANVIAA SSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKMVALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCG CDIDTALPIADYRGAQAVCPTVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP
Sequences:
>Translated_476_residues MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGVALRFVSADAWDGGYRNDPPA SADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAIQGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVR GALEQCTFTSEIPPDRRGLMVDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELP GQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNTTTHARGTRALAVQLANVIAA SSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKMVALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCG CDIDTALPIADYRGAQAVCPTVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP >Mature_476_residues MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGVALRFVSADAWDGGYRNDPPA SADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAIQGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVR GALEQCTFTSEIPPDRRGLMVDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELP GQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNTTTHARGTRALAVQLANVIAA SSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKMVALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCG CDIDTALPIADYRGAQAVCPTVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP
Specific function: Degrades thiamine by replacing its thiazole moiety with a wide range of nucleophiles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: =2.5.1.2 [H]
Molecular weight: Translated: 51436; Mature: 51436
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGV CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCE ALRFVSADAWDGGYRNDPPASADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAI EEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH QGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVRGALEQCTFTSEIPPDRRGLM HCCCCCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE VDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELP EEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC GQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNT CCCCCCEEEECCCCCEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCC TTHARGTRALAVQLANVIAASSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKM CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH VALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCGCDIDTALPIADYRGAQAVCP HHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH TVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGV CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCE ALRFVSADAWDGGYRNDPPASADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAI EEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH QGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVRGALEQCTFTSEIPPDRRGLM HCCCCCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE VDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELP EEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC GQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNT CCCCCCEEEECCCCCEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCC TTHARGTRALAVQLANVIAASSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKM CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH VALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCGCDIDTALPIADYRGAQAVCP HHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH TVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8631946; 9843405 [H]