Click here to switch to the map view.

The map label for this gene is ddpA [H]

Identifier: 53721987

GI number: 53721987

Start: 1274424

End: 1276016

Strand: Reverse

Name: ddpA [H]

Synonym: BPSS0964

Alternate gene names: 53721987

Gene position: 1276016-1274424 (Counterclockwise)

Preceding gene: 53721990

Following gene: 53721980

Centisome position: 40.21

GC content: 65.91

Gene sequence:

>1593_bases
ATGAAGCACATGCTGTCCAAGCTCGCGGCGAGCGCCGCACTCGCCGCGCTGGCCCCGGTGCCGGCCCCCGCGCACGCGGC
CACGCCGCCCGGCATCTTCGTGATCGCGACGCAGCTCGGCGAATTCACGACGCTCGACCCGAGCGAAATCTACGAGCTCG
TGCCGTCCGAATACGTCGCGAACACGTACGAGCGGCTCGTGCGCGTCGACCTGCGCGAACCGTCGAAATTCGAAGGCCGG
ATCGCGCAATCGTGGAGCGTCGGCGCGGACGGCCTCACCTACACGTTCAAGCTGCGCACCGGCCTGAAGTTCCACTCGGG
CAATCCGGTGACGGCCGACGACGTGGCGTGGTCGCTGCAGCGCACGGTGCTGCTCGACAAAGGGCCGGCCGGCGTGCTCG
CGGACCTCGGCCTGACCAAGGACAACGTCGCGCGGAAGGTACGCAAGCTCGACGACACGACCGTGTCGATCGAGACCGAC
CGCCGGTACGCGCCGAGCTTCGTGCTGAACGTGCTGAGCGCGGACCCGGCATCGATCGTCGACAAGCAGTTGCTGCTCTC
GCACGAGAAGAACGGCGACTTCGGCAATGCATGGCTGAAGAACGCGGATGCCGGCTCGGGCCCGTACCGGCTCGTCAAGT
GGACGCCGAACGAAAGCCTCGTGCTGCAACGCTTCGACGGCTACCGCGCGCCGTATCCGATGAAGCGCATCGTGTTGCGG
CACGTGCCGGAAGCGTCCGCGCAGCGCCTGCTGCTCGAGAACGGCGACGTCGACGCCGCGCGCAACCTGAGCCCCGACAG
CCTTGCTGCGCTGTCGAAGGCGGGCAAGATCCACGTCGCGTCATGGCCCGTGTCCGCGCTGCTGTACCTGAGCCTGAACA
CGAGGAATCCGAATCTCGCGAAGCCCGAGGTGCAGGAAGCGATGAAGTGGCTCGTCGATTACGACGGCATCCAGCGCAAC
ATCGTCAGGACGACGTACAAGGTGCATCAGACCTTCCTGCCGGACGGCTTCCTCGGCGCGCTGGACGCGAATCCGTACCG
GCAGAACGTCGCGAAGGCGAAGGCGCTGCTCGCGAAGGCCGGCCTGCCGAACGGCTTCGCGGTAACGATGGACATGCCGA
ACGATTACCCGTACGTCGAGATCGCGCAGGCGTTGCAGGCGAACTTCGCGCAGGGCGGCATCCAGGTGAAGCTGATTCCG
GGCGACGCGAAACAGGCGATCGGCAAGTACCGTGCGCGCCAGCACGACATCTTCATCGGCGAATGGTCGCCGGACTACAT
GGACCCGAACAGCAACGCGCGCGGTTTCGCGTGGAATCCCGACAATTCGGACAACGCCAAGCACAAGCTGCTCGCGTGGC
GCAACGGCTGGGATGTGCCGCAACTGACCGCGAAGACCGATGCGGCGCTCGCCGAGCCGTCGGCCGCGAAGCGCGCGCAG
GACTATCAGGCGCTGCAAAAGGCGGTGCTCGCGAATTCGCCGTTCGTGATCCTGTTCGAGAAGGTCGTGCAGGTTGCGAC
GCGGCCGGGTGTCACGGGCCCGGAAATCGGGCCGATCAACGATCTCGTGTCGTATCGGACCTTGAAGAAGTAA

Upstream 100 bases:

>100_bases
TGACGCGGCGCAGCGGGGTCTCGCGCCGCGACGGCCGAGGTTTCTGGAACGCGCCCGGCAATGAGAGAATCGGGCTCGAT
ACCTTTTCGACGGAGTCTCG

Downstream 100 bases:

>100_bases
CCGCGTGGGCGCGGGCGCGCGCCGTCGCGAATCCGGCGGCGCGCTCGGCGGCGGCGCGATCTTCGCGGCGATCCGGCCGC
CGCGCATCGCTCGCCGCGCG

Product: periplasmic solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MKHMLSKLAASAALAALAPVPAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK

Sequences:

>Translated_530_residues
MKHMLSKLAASAALAALAPVPAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
>Mature_530_residues
MKHMLSKLAASAALAALAPVPAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVANTYERLVRVDLREPSKFEGR
IAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQRTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETD
RRYAPSFVLNVLSADPASIVDKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLAKPEVQEAMKWLVDYDGIQRN
IVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKAGLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIP
GDAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=538, Percent_Identity=31.0408921933086, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1789966, Length=482, Percent_Identity=25.9336099585062, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787052, Length=371, Percent_Identity=26.9541778975741, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787551, Length=547, Percent_Identity=25.7769652650823, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1789887, Length=563, Percent_Identity=25.9325044404973, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1789397, Length=520, Percent_Identity=24.8076923076923, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58068; Mature: 58068

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMLSKLAASAALAALAPVPAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHH
NTYERLVRVDLREPSKFEGRIAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCCHHHHHHHHH
RTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETDRRYAPSFVLNVLSADPASIV
HEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHH
DKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHH
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLA
HCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEECCCCCCC
KPEVQEAMKWLVDYDGIQRNIVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHC
GLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIPGDAKQAIGKYRARQHDIFIG
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCEEEE
EWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
HHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKHMLSKLAASAALAALAPVPAPAHAATPPGIFVIATQLGEFTTLDPSEIYELVPSEYVA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHH
NTYERLVRVDLREPSKFEGRIAQSWSVGADGLTYTFKLRTGLKFHSGNPVTADDVAWSLQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCCHHHHHHHHH
RTVLLDKGPAGVLADLGLTKDNVARKVRKLDDTTVSIETDRRYAPSFVLNVLSADPASIV
HEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHH
DKQLLLSHEKNGDFGNAWLKNADAGSGPYRLVKWTPNESLVLQRFDGYRAPYPMKRIVLR
HHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHH
HVPEASAQRLLLENGDVDAARNLSPDSLAALSKAGKIHVASWPVSALLYLSLNTRNPNLA
HCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEECCCCCCC
KPEVQEAMKWLVDYDGIQRNIVRTTYKVHQTFLPDGFLGALDANPYRQNVAKAKALLAKA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHC
GLPNGFAVTMDMPNDYPYVEIAQALQANFAQGGIQVKLIPGDAKQAIGKYRARQHDIFIG
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCEEEE
EWSPDYMDPNSNARGFAWNPDNSDNAKHKLLAWRNGWDVPQLTAKTDAALAEPSAAKRAQ
CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
DYQALQKAVLANSPFVILFEKVVQVATRPGVTGPEIGPINDLVSYRTLKK
HHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]