Click here to switch to the map view.

The map label for this gene is xynZ [H]

Identifier: 53721965

GI number: 53721965

Start: 1241388

End: 1242260

Strand: Reverse

Name: xynZ [H]

Synonym: BPSS0941

Alternate gene names: 53721965

Gene position: 1242260-1241388 (Counterclockwise)

Preceding gene: 53721966

Following gene: 53721962

Centisome position: 39.15

GC content: 70.22

Gene sequence:

>873_bases
ATGCGCGCCTCCAACCATTACGCCGTCATGCGCCGATTCGTCTCGCCCCTCGCCGCGCTGCTCGCCGCCGCGCTCACCGC
CGCCGCGCACGCGGCCCCCGCCAGCAGCATCGTCACCCGCACGTTCCGCTCGCCCGCGCTGCACCGGGACTGGTCGTACA
CCGTGTATCTGCCGGCCGGCTACAACCCCGAAGGCGCGCGCTACCCCGTGCTGTACCTGCTGCACGGCAACGCCGGCAAC
GCGAACGACTGGATCACGCAGGGCCGCCTGCAGCTCACCGCCGACGCGCTGATCGAGCGCCGCGATATCGCGCCCGTCGT
GATCGTAATGCCGCAAGGCGGCACCGATTGGTACGTCGACCGCAAGGAAAAGATGCAGAGCGCGTTTCTCGACGATCTGA
TTCCCGACGTCGAAGCGCATTACGCGGTGTCGAACCAGCGCGCGGGGCGGGCGATCGGCGGCGTGTCGATGGGCGGCTAC
GGCGCGCTGCGCTTCGCGTTCCTCGAGCCGGAGCGCTTCTGCGGCGCGATGCTGCTCAGCCCCGCGATCTACGCGAACGA
GCCGCCCGCGAGCTCGGCCGCGCGCTACGTCGGCGTGTTCGGCGACCGGCAGTTCGACCCGAAGGTCTGGCACGAGCTCA
ACTATCCCGCGCTGTGGCGCGGCTACTTCGCGCAGCCGCTGCGGCTGCGGATGTTCATCGCCGCGGGCGACGACGACCTG
TCGATCCAGGCCGAATCGAGCGCGCTCTACACGAGCCTGCGGCGCGCGCAGAACCCCGCCGCGTTGCGGATCGTCGACGG
CGCGCATACGTGGGACGTGTGGCGCCGCCTGATCGGCCCCGCGCTCAAGTACACGCTCGAGTGCGTGAAGTGA

Upstream 100 bases:

>100_bases
CTGCAGCCGCTGCGGCCGTTCCGGCTGCCGCTGCGGCTGCCGCTGCGCCGCCCGAAACGCTGAAAATCCGCCTACGGCCG
TCATGCGCCGCTGCTAGCAT

Downstream 100 bases:

>100_bases
CTGCGCGTGCGACGCGGCACGCGGCGAGATCCCATGCCGCGCAGCCGACGCTCTTGAAGAACACGGGCGCGCCCGGTGCG
GGCGACGCGTTGGAGGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAGYNPEGARYPVLYLLHGNAGN
ANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVDRKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGY
GALRFAFLEPERFCGAMLLSPAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDL
SIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK

Sequences:

>Translated_290_residues
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAGYNPEGARYPVLYLLHGNAGN
ANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVDRKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGY
GALRFAFLEPERFCGAMLLSPAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDL
SIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK
>Mature_290_residues
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAGYNPEGARYPVLYLLHGNAGN
ANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVDRKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGY
GALRFAFLEPERFCGAMLLSPAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDL
SIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK

Specific function: Unknown

COG id: COG0627

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

Organism=Escherichia coli, GI145693201, Length=258, Percent_Identity=26.7441860465116, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 32100; Mature: 32100

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEECC
YNPEGARYPVLYLLHGNAGNANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVD
CCCCCCCCCEEEEEECCCCCCCHHHHCCEEEEEHHHHHHHCCCCCEEEEEECCCCCCEEC
RKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGYGALRFAFLEPERFCGAMLLS
HHHHHHHHHHHHHCCCCHHHHEECCCCCCCEECCCCCCCCCEEEEEEECHHHHHHHHHHC
PAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDL
CHHCCCCCCHHHHHHEEEECCCCCCCHHHHHCCCCCHHHHHHHCCCEEEEEEEEECCCCC
SIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK
EEEECHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEECC
YNPEGARYPVLYLLHGNAGNANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVD
CCCCCCCCCEEEEEECCCCCCCHHHHCCEEEEEHHHHHHHCCCCCEEEEEECCCCCCEEC
RKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGYGALRFAFLEPERFCGAMLLS
HHHHHHHHHHHHHCCCCHHHHEECCCCCCCEECCCCCCCCCEEEEEEECHHHHHHHHHHC
PAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDL
CHHCCCCCCHHHHHHEEEECCCCCCCHHHHHCCCCCHHHHHHHCCCEEEEEEEEECCCCC
SIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK
EEEECHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]