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The map label for this gene is 53721958

Identifier: 53721958

GI number: 53721958

Start: 1231748

End: 1233412

Strand: Reverse

Name: 53721958

Synonym: BPSS0934

Alternate gene names: NA

Gene position: 1233412-1231748 (Counterclockwise)

Preceding gene: 53721959

Following gene: 53721956

Centisome position: 38.87

GC content: 69.13

Gene sequence:

>1665_bases
ATGGCCCGCATCATTCCCGACGACTGGAAGAACCTCGCCGCCACGGGCGCGGCCGAGCGCGAACGCGAAACGCTCGCGAC
GCTGGAGCGGACGCTGCCCGACGCATACACCGTCTATCACGGCGTGCACTGGACGCGCGCCGACCACAACTTCTCGGTAT
TCGGCGAAGCCCACTTCGTGATCGTGAGCCCGGCCGGGCGCGTGCTCGTGATCGAGCAGAAGGCGGGCTTCCTGCGCGAG
ACGCCGAAGGGGCTCGTCAAGGTCTATCTGCAGACCGAGCGCAACGTGTCGATCCAGCTCGCGCGCACGCTCGAGAACCT
GCATCGGCGGCTCACCGCCGCGCTCGGCGCGGGCGCGTACGGCGTAGAGGAACTGCTGTATTGCCCCGATTACACGATCA
GGAACCCCGCGATCGCGGGCGTCGCGCCCGCGCGGATCGTCGATGCGACGCGCAGGCACGCGCTCGCCGCGCGCATCGTC
GATGCGCTGCCCGCCGACGAGCCGCCCTTTCCGAGCGCGGCGAAGGTGCATCATTTCCTCGCGAACGAGCTATCGCTCAC
GCCGGACACGAGCGCGCTCGTCGGCCAGGCGGACACGCTCGTCACGCGGCTCTCGGGCGGCCTCGCCGCATGGGCTCGCC
GGCTCGAATTCGAACCGTTCCGGCTGCGCGTGATCGCGACCGCGGGCGCCGGCAAGACGCAGCTCGCGGTGCAGGCGATG
CGCGGCGCCATCTCGGCCGGCAAGCGCGTGCTTTACGTGTGCTTCAACCGGCCGCTCGCCGATCACGTCGCGCGAATCGC
TCCGCAAGGCGTGAAGATCGCGAACTACCACCAGCTCTGCGACTGGATCGCGCGCGACGGCGGTCACGTCCCCGACTTCG
GCGCGCGCGACGCGTTCGCGCAGCTCGAGGCGCGCTTCGCGCAAACGCCGATCGCCGAGTGCTGGCGGTTCGATACGCTG
ATCGTCGACGAAGGCCAGGACTTCCAGCCGTCGTGGGCGCATGCGCTCGAGCGGCTCGTCGCGCCCGGCGGCGCATGGTG
GTGGCTCGAGGATCCGCTGCAGAACCTCTACATGCGCGAGCGCGTGCCGCTGAGCGGCTGGGTAACGCTCAAGGAGACGA
CCAACTATCGCAGCCCGCGCGACATCCTCGATTACGTGCGCGACGTCGTCGGCAGCGTCGAGCCGCTCGCAGCCGAGCTC
GTGTCGGGCAGCCCGTTCGGCGGATCGGAGATCTCGATTTCCGCGTACGACGACGCGCACGCGCAATCGCCCGCGCAAGC
ATGCATCGACGCGACGAAGCGCGCGATCACGCACGCGCTCGCGCTCGGCTTTCGCAAGCAGGACATCGCGGTGCTGTCGT
TCAGGGGGCGCGAGGGCTCGGCGCTCGCGACGCTCGATCAGCTCGGCCCGCACCGCGTGAAGAGCTTCACCGGCAAATAC
GATCTGTTCGGCAATCCCGAATACCGCGAAGGCGACGTGCTGCTCGATTCGCTCCACCGCTTCAAGGGGCAGGCCGCGCC
GTGCGTGATCCTGACCGAAGTCGATTTCGATGCGTTCGACGAGCGGGCGGCGCGCAAGCTGTTCGTCGGCGCGACGCGCG
CGACGATGAAGCTGATCGTCGTCGCGTCGAAACGCGCGGCGCAGCGGATCGCGCCTTCCGCGTGA

Upstream 100 bases:

>100_bases
CGACGCTGGTCGCCCCGCAAGCCGCGCCGCCCCAATCCGCAGGCGTCTGCGTACAATAGCCGGCGCCTCTTGCCCATCGC
ACGCACTGTCAGGACCCGAC

Downstream 100 bases:

>100_bases
CGGAGCGGCGCGCGCCCCACGTCTGCCGATTCAGGCGCATCCGGTCCGCTCGGGGCGGGCCGCGCAGCGCGAACGGCGCG
GGCATCGCGGGCGTCGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NERD Domain-Containing Protein; Nerd Domain Protein; AAA ATPase

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFVIVSPAGRVLVIEQKAGFLRE
TPKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAYGVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIV
DALPADEPPFPSAAKVHHFLANELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAM
RGAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCDWIARDGGHVPDFGARDAFAQLEARFAQTPIAECWRFDTL
IVDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRERVPLSGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAEL
VSGSPFGGSEISISAYDDAHAQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKY
DLFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIVVASKRAAQRIAPSA

Sequences:

>Translated_554_residues
MARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFVIVSPAGRVLVIEQKAGFLRE
TPKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAYGVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIV
DALPADEPPFPSAAKVHHFLANELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAM
RGAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCDWIARDGGHVPDFGARDAFAQLEARFAQTPIAECWRFDTL
IVDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRERVPLSGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAEL
VSGSPFGGSEISISAYDDAHAQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKY
DLFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIVVASKRAAQRIAPSA
>Mature_553_residues
ARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFVIVSPAGRVLVIEQKAGFLRET
PKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAYGVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIVD
ALPADEPPFPSAAKVHHFLANELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAMR
GAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCDWIARDGGHVPDFGARDAFAQLEARFAQTPIAECWRFDTLI
VDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRERVPLSGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAELV
SGSPFGGSEISISAYDDAHAQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKYD
LFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIVVASKRAAQRIAPSA

Specific function: Unknown

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60822; Mature: 60691

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFV
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCCEEEECCEEEE
IVSPAGRVLVIEQKAGFLRETPKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAY
EECCCCCEEEEECCCCCHHHCCHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCC
GVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIVDALPADEPPFPSAAKVHHFL
CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ANELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAM
HHHCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHH
RGAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCDWIARDGGHVPDFGARDAFA
HHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHH
QLEARFAQTPIAECWRFDTLIVDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRE
HHHHHHHCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
RVPLSGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAELVSGSPFGGSEISISAYDDAH
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCC
AQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHCCCCE
DLFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIV
ECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHEEEEE
VASKRAAQRIAPSA
EECHHHHHHCCCCC
>Mature Secondary Structure 
ARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFV
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCCEEEECCEEEE
IVSPAGRVLVIEQKAGFLRETPKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAY
EECCCCCEEEEECCCCCHHHCCHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCC
GVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIVDALPADEPPFPSAAKVHHFL
CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ANELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAM
HHHCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHH
RGAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCDWIARDGGHVPDFGARDAFA
HHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHH
QLEARFAQTPIAECWRFDTLIVDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRE
HHHHHHHCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
RVPLSGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAELVSGSPFGGSEISISAYDDAH
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCC
AQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHCCCCE
DLFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIV
ECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHEEEEE
VASKRAAQRIAPSA
EECHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA