Click here to switch to the map view.

The map label for this gene is 53721651

Identifier: 53721651

GI number: 53721651

Start: 838747

End: 840261

Strand: Reverse

Name: 53721651

Synonym: BPSS0615

Alternate gene names: NA

Gene position: 840261-838747 (Counterclockwise)

Preceding gene: 53721652

Following gene: 53721650

Centisome position: 26.48

GC content: 76.3

Gene sequence:

>1515_bases
ATGCCCCGTTCCTCGCCGCGGCCGCCGCCCGCGCGCGGCAAACTCCCCGCGCGGCTCGCGCGCGCGGCCGTGCTGATCGG
CCTGCTGCTCGCATGCGCGGCGGCGGCGGCGGCGGCCGGCGCCGCCGCCGCCGCGCGCGCGCCCATCGTCGTGATCCCGG
TCGCGGGCGCGATCGGCCCGGCGAGCGCCGATTTCGTCGTCCGCGGCCTCGAGCGCGCCGCGCGCGAGCACGCGCCGCTC
GCGATCGTCCAGCTCGACACGCCCGGCGGCCTCGACACCTCGATGCGGCAGATCATCAAGGCGATCGTCGCCTCGGGCGT
GCCCGTCGCCGCGTTCGTCGCGCCGGGCGGCGCACGCGCGGCGAGCGCCGGCACCTATATCGTCTATGCAAGCCACGTGG
CGGCGATGGCGCCCGGCACGAACCTCGGCGCGGCGTCGCCCGTGCAGCTCGGCATCGGCGGCCAGGCGCCGGCGGGCGGG
CGACGCGAGCCTGCCGGCGCGCCCGGGGCGGCGGGCGCGGGTGCGACCGATACGGAATCGATCGAAACCCGCAAGGCGCT
GCACGACGCGGCCGCTTACATCCGCGGCCTCGCGCAGTTGCGCGGGCGCAACGCCGAATGGGCGGAGCGCGCGGTGCGCG
AGGCGGTGAGCCTGCCCGCGAACGACGCGCTCGCACAGCACGTGGTCGACCTGCTCGCGAACGACCCGGCCGATCTCGCC
GCGAAGCTCGACGGCCGCACGATCGTCACCGCCACGGGCGCGCACCGGCTCGACACCGCGCAGGCGCCGCTCGAGACGCT
CGAGCCCGACTGGCGCAGCCGGCTGCTCGCGACGATCGCCGATCCGAGCGTCGCGCTCGTGCTCGTCACGCTCGGCATGT
ACGGGCTCTTCTTCGAATTCGCGAATCCCGGCTTCGTGCTGCCGGGCGTCGCGGGCGCGATCAGCCTGCTCGTCGGCCTG
TTCGCGCTGCAATTGCTGCCGATCAGCTACGCGGGCCTCGCGCTCGTGCTGCTCGGCATCGCGTTCCTGATCGCCGAGAC
GTTCCTGCCGACGTTCGGCGCGCTCGGCGTGGGCGGCATCGTCGCGTTCGCGATCGGCGCGCTGATGCTGATCGACACCG
ACGTGCCCGGCTACGGCGTGCCGTGGCCCGTGATCGCGTCGCTCGCGGCCGCGGGCGCGATCCTCGTGTTCGGCGTGTCG
GGCTTCGCGCTGCGCGCGCGCCGGCGGCCCGTCGTCACGGGCGCGGAGGCGATCGTCGGCAGCATCGGCGAGGTGCTCGA
CGACGGGCTCGTGCCCGATCAGCCGCCGCAGATCGGCCCGAGCGCGGACCCGGGCGCGCCGCTCGCGCCGTCCGCGGCCG
GCTGGGCGCGCGTGCACGGCGAGCGCTGGCGCGTCGCGAGCGCGACGCCGATCGCGGCCGGCCGCCGCGTGCGCGTGACG
GGCCGCAACGGCCTCACGCTCACCGTCGCACCGCTGTACGACAACGTCGTCCCCCCACGAGGAGAGCCACCATGA

Upstream 100 bases:

>100_bases
AACCGCCTACTCTTTAAGCACCGGGCGCACGCCCTTCCCACGGCCCGGCTGCGGCGCCGCACCATGCGGCCGCGCGCCGC
CGGCCGACACCGCGATGCCC

Downstream 100 bases:

>100_bases
TGGGTTTCACGTTCGGTTTCGGCAGCCTGCTGTTCGTATTCGCGCTGTTCCTCGTCGCCTCGTCGATCCGGATCTTTCGC
GAGTACGAGCGCGGTGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; NfeD Protein; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Nodulation Protein NfeD; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Membrane-Bound Serine Protease-Like Protein; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; Serine Protease; Nodulation Protein; Membrane-Bound Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound ClpP-Class Protease; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPL
AIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGG
RREPAGAPGAAGAGATDTESIETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLA
AKLDGRTIVTATGAHRLDTAQAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAISLLVGL
FALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVS
GFALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVT
GRNGLTLTVAPLYDNVVPPRGEPP

Sequences:

>Translated_504_residues
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPL
AIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGG
RREPAGAPGAAGAGATDTESIETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLA
AKLDGRTIVTATGAHRLDTAQAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAISLLVGL
FALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVS
GFALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVT
GRNGLTLTVAPLYDNVVPPRGEPP
>Mature_503_residues
PRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLA
IVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGR
REPAGAPGAAGAGATDTESIETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAA
KLDGRTIVTATGAHRLDTAQAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAISLLVGLF
ALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSG
FALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTG
RNGLTLTVAPLYDNVVPPRGEPP

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50708; Mature: 50577

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
ASADFVVRGLERAAREHAPLAIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARA
CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
ASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGRREPAGAPGAAGAGATDTES
CCCCEEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
IETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
AKLDGRTIVTATGAHRLDTAQAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEF
HHCCCCEEEEECCCCCCCHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ANPGFVLPGVAGAISLLVGLFALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGI
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSGFALRARRRPVVTGAEAIVG
HHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCHHHHHCCCCCCCHHHHHHH
SIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEEE
GRNGLTLTVAPLYDNVVPPRGEPP
CCCCCEEEEECHHCCCCCCCCCCC
>Mature Secondary Structure 
PRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAAGAAAAARAPIVVIPVAGAIGP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
ASADFVVRGLERAAREHAPLAIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARA
CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
ASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGRREPAGAPGAAGAGATDTES
CCCCEEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
IETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
AKLDGRTIVTATGAHRLDTAQAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEF
HHCCCCEEEEECCCCCCCHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ANPGFVLPGVAGAISLLVGLFALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGI
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSGFALRARRRPVVTGAEAIVG
HHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCHHHHHCCCCCCCHHHHHHH
SIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEEE
GRNGLTLTVAPLYDNVVPPRGEPP
CCCCCEEEEECHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA