| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is lsdA [H]
Identifier: 53721579
GI number: 53721579
Start: 741664
End: 743229
Strand: Reverse
Name: lsdA [H]
Synonym: BPSS0543
Alternate gene names: 53721579
Gene position: 743229-741664 (Counterclockwise)
Preceding gene: 53721582
Following gene: 53721578
Centisome position: 23.42
GC content: 66.92
Gene sequence:
>1566_bases ATGACATATTCCAAACAAGCCGTTTCCCGTCGACACAAACGTTTGGCCCTGAGCGCGGCCGCGCTCACCGCAGCCGCTTG CATGTCGGCGCACGCGCAGAGCGACGGCGCCGGCCCCGCGCCGACGCCGCACACGCAGCAGGCCTACGATCCCGAAAGCC ATTTCACGATGCGCTGGACGCGCGCGGACATGCGTCAGATCGTCAAGCAATCGCACACGGCGGGCGCCGACAAGAACTCG CTGCCGCCCGCGCTGACGATGCCGGACATCGCGCAGAACTTTCCGCTCGTCGATTCGAACGTGTGGGTATGGGATACCTG GCCGCTCGCCGACATGCGCGCGAACCAGTTGAGCTACAAGGGCTGGGAAGTGATCTTCTCGCTGAGCGCCGATCCGCGCG CGGGCTACACGTTCGACGATCGCCACGTGCATGCGCGCATCGGCTTCTTCTATCGCCGCGCGGGCATTCCGGCTTCGCAG CGTCCGGCCAACGGCGGCTGGACCTGGGGCGGCCATCTGTTTCCGGACGGCGCGAGCGCGAAGGTGTTCGGCACCGCGCC GATGACGAACAACGCCGAGTGGTCCGGCTCCGCGCGCCTCACGCACGGCGAGAACGTCAGCCTCTACTACACCGCGCTGT CGTTCAATCGCTCGGCGCCCGGCGGCGCCGACATCACGCCGCCGATCGCGATCATCACGCGCGCGGACGGTCACATCCAC GCGGACGACAAGCATGTGTGGTTCTCGGGATTCGACGATCACAAGGCGCTGCTGCAGCCTGAAGGCAAGATGTACCAGAC GGGCCAGCAGAACACTTACTACTCGTTCCGCGATCCGTTCGTGTTCACCGATCCCGCGCATCCGGGCAACACGTACATGG TGTTCGAGGGCAACACGGGCGGCCCGCGCGGCGCGCGCACCTGCACCGAAGCCGATCTCGGCTACGCACCGAACGATCCG TATCGCGAGGATCTGAACGCGGTGATGAACCTGGGCGCAGTGTATCAGAAGGCCAATGTCGGCCTCGCGATCGCGACGAA CCCTCAACTGACCGAGTGGAAGTTCCTGCCGCCGCTGCTGTCGGCGAACTGTGTCGACGATCAGACCGAGCGTCCGCAGA TCTATCTGAAGGACGGCAAGTACTACCTGTTCACGATCAGCCACCGGACGACAATGGCCGCCGGCATCGACGGCCCGGAC GGCGTGTATGGCTTCGTCGGCAACGGCATCCGCAGCGATTTCCTGCCGCTGAACGGCGGCAGCGGCCTCGTGCTCGGCAA CCCGACCGACTTCTCCGCGCCCGCCGGCGCGCCGTACGCACAGGACCCGAACCAGAACCCGCGCGCGTTCCAGTCGTACT CGCACTACGTGATGCCGGGCGGGCGCGTCGAGTCGTTCATCGACGCGATCGGCGCGCGGCGCGGCGGCACGCTCGCGCCG ACGGTGAAGATCGACATCCACGGCGATTCGACGACGGTCGACCGCGCGTACGGCGCGGGCGGCCTCGGCGGCTACGGCGA CATTCCCGCGAACCTGCCGGCCGTGGGCGCAGGCCACCACGACTGA
Upstream 100 bases:
>100_bases ACTTTTGACGCCCAAACCGGTTTGAATTAGCATCCAAACCGGTTTGGATATCCATTTTTAGTACGGCGCCGTCATAAACT TACCGATTCACGACAATTTC
Downstream 100 bases:
>100_bases CATGCCGGCGCAGGAAGGCGAACGCCGCATCCGCCTTCCTGCGCGCGGACGGCCGGACACTCCTGCGCCGTGCGCGCCGG CTCCGGCCGCCGTCGCGTAT
Product: levansucrase precursor
Products: NA
Alternate protein names: Beta-D-fructofuranosyl transferase; Sucrose 6-fructosyl transferase [H]
Number of amino acids: Translated: 521; Mature: 520
Protein sequence:
>521_residues MTYSKQAVSRRHKRLALSAAALTAAACMSAHAQSDGAGPAPTPHTQQAYDPESHFTMRWTRADMRQIVKQSHTAGADKNS LPPALTMPDIAQNFPLVDSNVWVWDTWPLADMRANQLSYKGWEVIFSLSADPRAGYTFDDRHVHARIGFFYRRAGIPASQ RPANGGWTWGGHLFPDGASAKVFGTAPMTNNAEWSGSARLTHGENVSLYYTALSFNRSAPGGADITPPIAIITRADGHIH ADDKHVWFSGFDDHKALLQPEGKMYQTGQQNTYYSFRDPFVFTDPAHPGNTYMVFEGNTGGPRGARTCTEADLGYAPNDP YREDLNAVMNLGAVYQKANVGLAIATNPQLTEWKFLPPLLSANCVDDQTERPQIYLKDGKYYLFTISHRTTMAAGIDGPD GVYGFVGNGIRSDFLPLNGGSGLVLGNPTDFSAPAGAPYAQDPNQNPRAFQSYSHYVMPGGRVESFIDAIGARRGGTLAP TVKIDIHGDSTTVDRAYGAGGLGGYGDIPANLPAVGAGHHD
Sequences:
>Translated_521_residues MTYSKQAVSRRHKRLALSAAALTAAACMSAHAQSDGAGPAPTPHTQQAYDPESHFTMRWTRADMRQIVKQSHTAGADKNS LPPALTMPDIAQNFPLVDSNVWVWDTWPLADMRANQLSYKGWEVIFSLSADPRAGYTFDDRHVHARIGFFYRRAGIPASQ RPANGGWTWGGHLFPDGASAKVFGTAPMTNNAEWSGSARLTHGENVSLYYTALSFNRSAPGGADITPPIAIITRADGHIH ADDKHVWFSGFDDHKALLQPEGKMYQTGQQNTYYSFRDPFVFTDPAHPGNTYMVFEGNTGGPRGARTCTEADLGYAPNDP YREDLNAVMNLGAVYQKANVGLAIATNPQLTEWKFLPPLLSANCVDDQTERPQIYLKDGKYYLFTISHRTTMAAGIDGPD GVYGFVGNGIRSDFLPLNGGSGLVLGNPTDFSAPAGAPYAQDPNQNPRAFQSYSHYVMPGGRVESFIDAIGARRGGTLAP TVKIDIHGDSTTVDRAYGAGGLGGYGDIPANLPAVGAGHHD >Mature_520_residues TYSKQAVSRRHKRLALSAAALTAAACMSAHAQSDGAGPAPTPHTQQAYDPESHFTMRWTRADMRQIVKQSHTAGADKNSL PPALTMPDIAQNFPLVDSNVWVWDTWPLADMRANQLSYKGWEVIFSLSADPRAGYTFDDRHVHARIGFFYRRAGIPASQR PANGGWTWGGHLFPDGASAKVFGTAPMTNNAEWSGSARLTHGENVSLYYTALSFNRSAPGGADITPPIAIITRADGHIHA DDKHVWFSGFDDHKALLQPEGKMYQTGQQNTYYSFRDPFVFTDPAHPGNTYMVFEGNTGGPRGARTCTEADLGYAPNDPY REDLNAVMNLGAVYQKANVGLAIATNPQLTEWKFLPPLLSANCVDDQTERPQIYLKDGKYYLFTISHRTTMAAGIDGPDG VYGFVGNGIRSDFLPLNGGSGLVLGNPTDFSAPAGAPYAQDPNQNPRAFQSYSHYVMPGGRVESFIDAIGARRGGTLAPT VKIDIHGDSTTVDRAYGAGGLGGYGDIPANLPAVGAGHHD
Specific function: Releases fructooligosaccharides and levan, a high- molecular-mass fructosyl polymer, from sucrose. It acts more as a sucrose hydrolase than as a fructan polymerase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 68 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003469 [H]
Pfam domain/function: PF02435 Glyco_hydro_68 [H]
EC number: =2.4.1.10 [H]
Molecular weight: Translated: 56326; Mature: 56195
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYSKQAVSRRHKRLALSAAALTAAACMSAHAQSDGAGPAPTPHTQQAYDPESHFTMRWT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEC RADMRQIVKQSHTAGADKNSLPPALTMPDIAQNFPLVDSNVWVWDTWPLADMRANQLSYK HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEECCCEEEEECCCCCHHHHCCCCCC GWEVIFSLSADPRAGYTFDDRHVHARIGFFYRRAGIPASQRPANGGWTWGGHLFPDGASA CEEEEEEECCCCCCCCCCCCCEEEEEEEEEEHHCCCCCCCCCCCCCCCCCCEECCCCCCC KVFGTAPMTNNAEWSGSARLTHGENVSLYYTALSFNRSAPGGADITPPIAIITRADGHIH EEEECCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEE ADDKHVWFSGFDDHKALLQPEGKMYQTGQQNTYYSFRDPFVFTDPAHPGNTYMVFEGNTG CCCCEEEECCCCCCHHHCCCCCCEEECCCCCCEEEECCCEEEECCCCCCCEEEEEECCCC GPRGARTCTEADLGYAPNDPYREDLNAVMNLGAVYQKANVGLAIATNPQLTEWKFLPPLL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEECCCHHH SANCVDDQTERPQIYLKDGKYYLFTISHRTTMAAGIDGPDGVYGFVGNGIRSDFLPLNGG CCCCCCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCCCCEEEECCCCCCCCCEECCCC SGLVLGNPTDFSAPAGAPYAQDPNQNPRAFQSYSHYVMPGGRVESFIDAIGARRGGTLAP CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEECCCCHHHHHHHHHHCCCCCEECC TVKIDIHGDSTTVDRAYGAGGLGGYGDIPANLPAVGAGHHD EEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TYSKQAVSRRHKRLALSAAALTAAACMSAHAQSDGAGPAPTPHTQQAYDPESHFTMRWT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEC RADMRQIVKQSHTAGADKNSLPPALTMPDIAQNFPLVDSNVWVWDTWPLADMRANQLSYK HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEECCCEEEEECCCCCHHHHCCCCCC GWEVIFSLSADPRAGYTFDDRHVHARIGFFYRRAGIPASQRPANGGWTWGGHLFPDGASA CEEEEEEECCCCCCCCCCCCCEEEEEEEEEEHHCCCCCCCCCCCCCCCCCCEECCCCCCC KVFGTAPMTNNAEWSGSARLTHGENVSLYYTALSFNRSAPGGADITPPIAIITRADGHIH EEEECCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEE ADDKHVWFSGFDDHKALLQPEGKMYQTGQQNTYYSFRDPFVFTDPAHPGNTYMVFEGNTG CCCCEEEECCCCCCHHHCCCCCCEEECCCCCCEEEECCCEEEECCCCCCCEEEEEECCCC GPRGARTCTEADLGYAPNDPYREDLNAVMNLGAVYQKANVGLAIATNPQLTEWKFLPPLL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEECCCHHH SANCVDDQTERPQIYLKDGKYYLFTISHRTTMAAGIDGPDGVYGFVGNGIRSDFLPLNGG CCCCCCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCCCCEEEECCCCCCCCCEECCCC SGLVLGNPTDFSAPAGAPYAQDPNQNPRAFQSYSHYVMPGGRVESFIDAIGARRGGTLAP CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEECCCCHHHHHHHHHHCCCCCEECC TVKIDIHGDSTTVDRAYGAGGLGGYGDIPANLPAVGAGHHD EEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8704949; 10214721 [H]